WormBase Tree Display for CDS: PPA23103
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PPA23103 | SMap | S_parent | Sequence | PPA_ChrV | |
---|---|---|---|---|---|
Structure | Source_exons (34) | ||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S13-89.45 | |
DB_remark | PPA-INX-20 protein; contains similarity to Pfam domains PF00635 (MSP (Major sperm protein) domain), PF00831 (Ribosomal L29 protein), PF00876 (Innexin), PF04051 (Transport protein particle (TRAPP) component); contains similarity to Interpro domains IPR000535 (Major sperm protein (MSP) domain), IPR000990 (Innexin), IPR001854 (Large ribosomal subunit protein uL29), IPR036049 (Large ribosomal subunit protein uL29 superfamily), IPR008962 (PapD-like superfamily), IPR007194 (Transport protein particle (TRAPP) component), IPR013783 (Immunoglobulin-like fold), IPR024096 (NO signalling/Golgi transport ligand-binding domain superfamily) | ||||
Origin | From_laboratory | RS | |||
Species | Pristionchus pacificus | ||||
Properties | Coding | CDS | |||
CDS_predicted_by | pristionchus.org | ||||
Prediction_status | Predicted | ||||
End_not_found | |||||
Visible | Gene | WBGene00112657 | |||
Corresponding_transcript | PPA23103.1 | ||||
Corresponding_protein | PP51608 | ||||
Corresponding_oligo_set | GPL14372_Probes_7697 | ||||
GPL14372_Probes_7698 | |||||
GPL14372_Probes_7699 | |||||
GPL14372_Probes_7701 | |||||
GPL14372_Probes_7702 | |||||
GPL14372_Probes_7703 | |||||
Microarray_results | GPL14372_Probes_7697 | ||||
GPL14372_Probes_7698 | |||||
GPL14372_Probes_7699 | |||||
GPL14372_Probes_7701 | |||||
GPL14372_Probes_7702 | |||||
GPL14372_Probes_7703 | |||||
RNASeq_FPKM (2) | |||||
Remark | [171116 mh6] renamed from gene-UMM-S13-89.45 | Curator_confirmed | WBPerson4055 | ||
Method | curated |