WormBase Tree Display for CDS: PPA23103
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| PPA23103 | SMap | S_parent | Sequence | PPA_ChrV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 5 | |||
| 1268 | 1310 | |||||
| 1727 | 1798 | |||||
| 1923 | 2018 | |||||
| 2974 | 3012 | |||||
| 3308 | 3389 | |||||
| 3468 | 3524 | |||||
| 4049 | 4142 | |||||
| 4341 | 4437 | |||||
| 4580 | 4636 | |||||
| 5986 | 6057 | |||||
| 6166 | 6269 | |||||
| 6530 | 6602 | |||||
| 6818 | 6901 | |||||
| 7161 | 7209 | |||||
| 7531 | 7584 | |||||
| 7823 | 7886 | |||||
| 8148 | 8240 | |||||
| 8555 | 8608 | |||||
| 8866 | 8938 | |||||
| 9944 | 10121 | |||||
| 10386 | 10472 | |||||
| 10809 | 10818 | |||||
| 11214 | 11332 | |||||
| 11593 | 11659 | |||||
| 13281 | 13335 | |||||
| 13457 | 13607 | |||||
| 16394 | 16451 | |||||
| 16986 | 17070 | |||||
| 17256 | 17312 | |||||
| 17518 | 17628 | |||||
| 17773 | 17866 | |||||
| 18096 | 18288 | |||||
| 19616 | 19688 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S13-89.45 | ||
| DB_remark | PPA-INX-20 protein; contains similarity to Pfam domains PF00635 (MSP (Major sperm protein) domain), PF00831 (Ribosomal L29 protein), PF00876 (Innexin), PF04051 (Transport protein particle (TRAPP) component); contains similarity to Interpro domains IPR000535 (Major sperm protein (MSP) domain), IPR000990 (Innexin), IPR001854 (Large ribosomal subunit protein uL29), IPR036049 (Large ribosomal subunit protein uL29 superfamily), IPR008962 (PapD-like superfamily), IPR007194 (Transport protein particle (TRAPP) component), IPR013783 (Immunoglobulin-like fold), IPR024096 (NO signalling/Golgi transport ligand-binding domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| End_not_found | ||||||
| Visible | Gene | WBGene00112657 | ||||
| Corresponding_transcript | PPA23103.1 | |||||
| Corresponding_protein | PP51608 | |||||
| Corresponding_oligo_set | GPL14372_Probes_7697 | |||||
| GPL14372_Probes_7698 | ||||||
| GPL14372_Probes_7699 | ||||||
| GPL14372_Probes_7701 | ||||||
| GPL14372_Probes_7702 | ||||||
| GPL14372_Probes_7703 | ||||||
| Microarray_results | GPL14372_Probes_7697 | |||||
| GPL14372_Probes_7698 | ||||||
| GPL14372_Probes_7699 | ||||||
| GPL14372_Probes_7701 | ||||||
| GPL14372_Probes_7702 | ||||||
| GPL14372_Probes_7703 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S13-89.45 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
