WormBase Tree Display for CDS: PPA23103
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| PPA23103 | SMap | S_parent | Sequence | PPA_ChrV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (34) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S13-89.45 | ||
| DB_remark | PPA-INX-20 protein; contains similarity to Pfam domains PF00635 (MSP (Major sperm protein) domain), PF00831 (Ribosomal L29 protein), PF00876 (Innexin), PF04051 (Transport protein particle (TRAPP) component); contains similarity to Interpro domains IPR000535 (Major sperm protein (MSP) domain), IPR000990 (Innexin), IPR001854 (Large ribosomal subunit protein uL29), IPR036049 (Large ribosomal subunit protein uL29 superfamily), IPR008962 (PapD-like superfamily), IPR007194 (Transport protein particle (TRAPP) component), IPR013783 (Immunoglobulin-like fold), IPR024096 (NO signalling/Golgi transport ligand-binding domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding (3) | |||||
| End_not_found | ||||||
| Visible | Gene | WBGene00112657 | ||||
| Corresponding_transcript | PPA23103.1 | |||||
| Corresponding_protein | PP51608 | |||||
| Corresponding_oligo_set | GPL14372_Probes_7697 | |||||
| GPL14372_Probes_7698 | ||||||
| GPL14372_Probes_7699 | ||||||
| GPL14372_Probes_7701 | ||||||
| GPL14372_Probes_7702 | ||||||
| GPL14372_Probes_7703 | ||||||
| Microarray_results | GPL14372_Probes_7697 | |||||
| GPL14372_Probes_7698 | ||||||
| GPL14372_Probes_7699 | ||||||
| GPL14372_Probes_7701 | ||||||
| GPL14372_Probes_7702 | ||||||
| GPL14372_Probes_7703 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S13-89.45 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
