WormBase Tree Display for Variation: WBVar01396718
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| WBVar01396718 | Evidence | Paper_evidence | WBPaper00037807 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01396718 | ||||
| Other_name | cewivar00738541 | |||||
| T08A11.1f.1:c.4450-200del | ||||||
| T08A11.1g.1:c.4450-200del | ||||||
| T08A11.1e.1:c.4444-200del | ||||||
| T08A11.1c.1:c.4444-200del | ||||||
| T08A11.1d.1:c.4450-200del | ||||||
| T08A11.1a.1:c.4438-200del | ||||||
| T08A11.1b.1:c.4444-200del | ||||||
| T08A11.1h.1:c.4456-200del | ||||||
| HGVSg | CHROMOSOME_III:g.4250283del | |||||
| Sequence_details | SMap | S_parent | Sequence | T08A11 | ||
| Flanking_sequences | CAAAATAGTTAATCCTTACTAGTTAGAATGCGTACAATTTTGAATTTTCC | AAAAAAAAAAAGTACAAAACCACAATTTGCCGGAGGTTTTCAATTCCGGC | ||||
| Mapping_target | T08A11 | |||||
| Type_of_mutation | Deletion | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00006642 | From_analysis | WGS_De_Bono | |||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | ||||
| Laboratory | AX | |||||
| Analysis | WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | ||||||
| DB_info | Database | dbSNP_ss | ss | 539115841 | ||
| Status | Live | |||||
| Affects | Gene | WBGene00011604 | ||||
| Transcript | T08A11.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | T08A11.1e.1:c.4444-200del | |||||
| Intron_number | 15/17 | |||||
| T08A11.1g.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | T08A11.1g.1:c.4450-200del | |||||
| Intron_number | 16/18 | |||||
| T08A11.1h.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | T08A11.1h.1:c.4456-200del | |||||
| Intron_number | 16/18 | |||||
| T08A11.1d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | T08A11.1d.1:c.4450-200del | |||||
| Intron_number | 16/18 | |||||
| T08A11.1f.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | T08A11.1f.1:c.4450-200del | |||||
| Intron_number | 15/17 | |||||
| T08A11.1c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | T08A11.1c.1:c.4444-200del | |||||
| Intron_number | 15/17 | |||||
| T08A11.1b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | T08A11.1b.1:c.4444-200del | |||||
| Intron_number | 16/18 | |||||
| T08A11.1a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | T08A11.1a.1:c.4438-200del | |||||
| Intron_number | 16/18 | |||||
| Reference | WBPaper00037807 | |||||
| Method | WGS_De_Bono |
