WormBase Tree Display for Variation: WBVar01262890
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| WBVar01262890 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01262890 | |||||
| Other_name | cewivar00386968 | ||||||
| T08A11.1f.1:c.3178-90A>T | |||||||
| T08A11.1d.1:c.3184-90A>T | |||||||
| T08A11.1a.1:c.3172-90A>T | |||||||
| T08A11.1e.1:c.3172-90A>T | |||||||
| T08A11.1c.1:c.3178-90A>T | |||||||
| T08A11.1b.1:c.3178-90A>T | |||||||
| T08A11.1g.1:c.3178-90A>T | |||||||
| T08A11.1h.1:c.3184-90A>T | |||||||
| HGVSg | CHROMOSOME_III:g.4253103T>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | T08A11 | |||
| Flanking_sequences | ATTATAGTGGGGCCATCGTCGAAGATAGAAAATTTAACATTTAAATAGTT | ATAAATTATAGATGGAGTACCGAAATTTAAGATGTATTAAAGGGTGATAT | |||||
| Mapping_target | T08A11 | ||||||
| Type_of_mutation | Substitution | t | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00006642 | From_analysis | WGS_De_Bono | ||||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539098545 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00011604 | |||||
| Transcript | T08A11.1e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1e.1:c.3172-90A>T | ||||||
| Intron_number | 11/17 | ||||||
| T08A11.1g.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1g.1:c.3178-90A>T | ||||||
| Intron_number | 12/18 | ||||||
| T08A11.1h.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1h.1:c.3184-90A>T | ||||||
| Intron_number | 12/18 | ||||||
| T08A11.1d.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1d.1:c.3184-90A>T | ||||||
| Intron_number | 12/18 | ||||||
| T08A11.1f.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1f.1:c.3178-90A>T | ||||||
| Intron_number | 11/17 | ||||||
| T08A11.1c.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1c.1:c.3178-90A>T | ||||||
| Intron_number | 11/17 | ||||||
| T08A11.1b.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1b.1:c.3178-90A>T | ||||||
| Intron_number | 12/18 | ||||||
| T08A11.1a.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1a.1:c.3172-90A>T | ||||||
| Intron_number | 12/18 | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
