WormBase Tree Display for Variation: WBVar01262887
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| WBVar01262887 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01262887 | |||||
| Other_name (17) | |||||||
| HGVSg | CHROMOSOME_III:g.4250991T>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | T08A11 | |||
| Flanking_sequences | TATTCAGCTTTGAATTTGAACATTTTCTTCGAGTTTAACGACGATTCCGA | CCGTATTTGCCTTCTGAACCTTATTTAACGATTATTACAGTACTTTTTTA | |||||
| Mapping_target | T08A11 | ||||||
| Type_of_mutation | Substitution | t | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00006642 | From_analysis | WGS_De_Bono | ||||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539098542 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00011604 | |||||
| Transcript | T08A11.1e.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | ||||||
| HGVSc | T08A11.1e.1:c.4200A>T | ||||||
| HGVSp | CE54607:p.Gly1400= | ||||||
| cDNA_position | 4200 | ||||||
| CDS_position | 4200 | ||||||
| Protein_position | 1400 | ||||||
| Exon_number | 15/18 | ||||||
| Codon_change | ggA/ggT | ||||||
| Amino_acid_change | G | ||||||
| T08A11.1g.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | T08A11.1g.1:c.4206A>T | ||||||
| HGVSp | CE54616:p.Gly1402= | ||||||
| cDNA_position | 4302 | ||||||
| CDS_position | 4206 | ||||||
| Protein_position | 1402 | ||||||
| Exon_number | 16/19 | ||||||
| Codon_change | ggA/ggT | ||||||
| Amino_acid_change | G | ||||||
| T08A11.1h.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | T08A11.1h.1:c.4212A>T | ||||||
| HGVSp | CE54610:p.Gly1404= | ||||||
| cDNA_position | 4308 | ||||||
| CDS_position | 4212 | ||||||
| Protein_position | 1404 | ||||||
| Exon_number | 16/19 | ||||||
| Codon_change | ggA/ggT | ||||||
| Amino_acid_change | G | ||||||
| T08A11.1d.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | T08A11.1d.1:c.4206A>T | ||||||
| HGVSp | CE54612:p.Gly1402= | ||||||
| cDNA_position | 4302 | ||||||
| CDS_position | 4206 | ||||||
| Protein_position | 1402 | ||||||
| Exon_number | 16/19 | ||||||
| Codon_change | ggA/ggT | ||||||
| Amino_acid_change | G | ||||||
| T08A11.1f.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | T08A11.1f.1:c.4206A>T | ||||||
| HGVSp | CE54622:p.Gly1402= | ||||||
| cDNA_position | 4206 | ||||||
| CDS_position | 4206 | ||||||
| Protein_position | 1402 | ||||||
| Exon_number | 15/18 | ||||||
| Codon_change | ggA/ggT | ||||||
| Amino_acid_change | G | ||||||
| T08A11.1c.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | T08A11.1c.1:c.4200A>T | ||||||
| HGVSp | CE54609:p.Gly1400= | ||||||
| cDNA_position | 4200 | ||||||
| CDS_position | 4200 | ||||||
| Protein_position | 1400 | ||||||
| Exon_number | 15/18 | ||||||
| Codon_change | ggA/ggT | ||||||
| Amino_acid_change | G | ||||||
| T08A11.1b.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | T08A11.1b.1:c.4200A>T | ||||||
| HGVSp | CE54613:p.Gly1400= | ||||||
| cDNA_position | 4296 | ||||||
| CDS_position | 4200 | ||||||
| Protein_position | 1400 | ||||||
| Exon_number | 16/19 | ||||||
| Codon_change | ggA/ggT | ||||||
| Amino_acid_change | G | ||||||
| T08A11.1a.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | T08A11.1a.1:c.4194A>T | ||||||
| HGVSp | CE54207:p.Gly1398= | ||||||
| cDNA_position | 4294 | ||||||
| CDS_position | 4194 | ||||||
| Protein_position | 1398 | ||||||
| Exon_number | 16/19 | ||||||
| Codon_change | ggA/ggT | ||||||
| Amino_acid_change | G | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
