WormBase Tree Display for Variation: WBVar01262882
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WBVar01262882 | Evidence | Paper_evidence | WBPaper00037807 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | WBVar01262882 | |||||
Other_name | cewivar00386959 | ||||||
T08A11.1h.1:c.5007-346T>A | |||||||
T08A11.1e.1:c.4995-346T>A | |||||||
T08A11.1a.1:c.4989-346T>A | |||||||
T08A11.1f.1:c.5001-346T>A | |||||||
T08A11.1d.1:c.5001-346T>A | |||||||
T08A11.1b.1:c.4995-346T>A | |||||||
T08A11.1c.1:c.4995-346T>A | |||||||
T08A11.1g.1:c.5001-346T>A | |||||||
HGVSg | CHROMOSOME_III:g.4249166A>T | ||||||
Sequence_details | SMap | S_parent | Sequence | Y44F5A | |||
Flanking_sequences | TTTCGTGTTTAGATTTTTTTCAAAATCGAAAGCGCATTTTATGTGACTTT | TTGTAATTTCAATTAAAATGAATATCCAAAAATAATGAAAATTTGACTTT | |||||
Mapping_target | Y44F5A | ||||||
Type_of_mutation | Substitution | a | T | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | ||||||
Variation_type | SNP | ||||||
Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00006642 | From_analysis | WGS_De_Bono | ||||
WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||||
Analysis | WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | |||||||
DB_info | Database | dbSNP_ss | ss | 539098538 | |||
Status | Live | ||||||
Affects | Gene | WBGene00011604 | |||||
Transcript | T08A11.1e.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | T08A11.1e.1:c.4995-346T>A | ||||||
Intron_number | 16/17 | ||||||
T08A11.1g.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T08A11.1g.1:c.5001-346T>A | ||||||
Intron_number | 17/18 | ||||||
T08A11.1h.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T08A11.1h.1:c.5007-346T>A | ||||||
Intron_number | 17/18 | ||||||
T08A11.1d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T08A11.1d.1:c.5001-346T>A | ||||||
Intron_number | 17/18 | ||||||
T08A11.1f.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T08A11.1f.1:c.5001-346T>A | ||||||
Intron_number | 16/17 | ||||||
T08A11.1c.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T08A11.1c.1:c.4995-346T>A | ||||||
Intron_number | 16/17 | ||||||
T08A11.1b.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T08A11.1b.1:c.4995-346T>A | ||||||
Intron_number | 17/18 | ||||||
T08A11.1a.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | T08A11.1a.1:c.4989-346T>A | ||||||
Intron_number | 17/18 | ||||||
Reference | WBPaper00037807 | ||||||
Method | WGS_De_Bono |