WormBase Tree Display for Variation: WBVar01262877
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| WBVar01262877 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01262877 | |||||
| Other_name | cewivar00386954 | ||||||
| T08A11.1f.1:c.*94C>T | |||||||
| T08A11.1h.1:c.*94C>T | |||||||
| T08A11.1g.1:c.*94C>T | |||||||
| T08A11.1c.1:c.*94C>T | |||||||
| T08A11.1b.1:c.*94C>T | |||||||
| T08A11.1e.1:c.*94C>T | |||||||
| T08A11.1a.1:c.*94C>T | |||||||
| T08A11.1d.1:c.*94C>T | |||||||
| HGVSg | CHROMOSOME_III:g.4248576G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y44F5A | |||
| Flanking_sequences | AAACTGAAATTGGCTAAAATCTGAATTAGGATGATTCATTAAAAATGAAT | GAAAACATAATATGAAAAGTTTTTTTTGGAATGAAAAAGAAAGGGAGAAT | |||||
| Mapping_target | Y44F5A | ||||||
| Type_of_mutation | Substitution | g | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00006642 | From_analysis | WGS_De_Bono | ||||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539098533 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00011604 | |||||
| Transcript | T08A11.1e.1 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1e.1:c.*94C>T | ||||||
| cDNA_position | 5239 | ||||||
| Exon_number | 18/18 | ||||||
| T08A11.1g.1 | VEP_consequence | 3_prime_UTR_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1g.1:c.*94C>T | ||||||
| cDNA_position | 5341 | ||||||
| Exon_number | 19/19 | ||||||
| T08A11.1h.1 | VEP_consequence | 3_prime_UTR_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1h.1:c.*94C>T | ||||||
| cDNA_position | 5347 | ||||||
| Exon_number | 19/19 | ||||||
| T08A11.1d.1 | VEP_consequence | 3_prime_UTR_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1d.1:c.*94C>T | ||||||
| cDNA_position | 5341 | ||||||
| Exon_number | 19/19 | ||||||
| T08A11.1f.1 | VEP_consequence | 3_prime_UTR_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1f.1:c.*94C>T | ||||||
| cDNA_position | 5245 | ||||||
| Exon_number | 18/18 | ||||||
| T08A11.1c.1 | VEP_consequence | 3_prime_UTR_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1c.1:c.*94C>T | ||||||
| cDNA_position | 5239 | ||||||
| Exon_number | 18/18 | ||||||
| T08A11.1b.1 | VEP_consequence | 3_prime_UTR_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1b.1:c.*94C>T | ||||||
| cDNA_position | 5335 | ||||||
| Exon_number | 19/19 | ||||||
| T08A11.1a.1 | VEP_consequence | 3_prime_UTR_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T08A11.1a.1:c.*94C>T | ||||||
| cDNA_position | 5333 | ||||||
| Exon_number | 19/19 | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
