WormBase Tree Display for Variation: WBVar00251504
expand all nodes | collapse all nodes | view schema
WBVar00251504 | Name | Public_name | tm2656 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | C02E11.1b.1:c.2452_2763del | |||||||
C02E11.1a.1:c.2446_2757del | ||||||||
CE28528:p.Ser816_Arg919del | ||||||||
CE32040:p.Ser818_Arg921del | ||||||||
HGVSg | CHROMOSOME_V:g.1044339_1044650del | |||||||
Sequence_details | SMap | S_parent | Sequence | C02E11 | ||||
Flanking_sequences | gtattcacaatccgggagaagcccacggat | tccagcaccttttccaccgaccaaagacaa | ||||||
Mapping_target | C02E11 | |||||||
Source_location | 7 | CHROMOSOME_V | 1044338 | 1044651 | Inferred_automatically | National_Bioresource_Project | ||
Type_of_mutation | Deletion | |||||||
PCR_product | tm2656_external | |||||||
tm2656_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Laboratory | FX | |||||||
Author | Mitani S | |||||||
DB_info | Database | National_Bioresource_Project | seq | 2656 | ||||
NBP_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00015344 | ||||||
Transcript | C02E11.1b.1 | VEP_consequence | inframe_deletion | |||||
VEP_impact | MODERATE | |||||||
HGVSc | C02E11.1b.1:c.2452_2763del | |||||||
HGVSp | CE32040:p.Ser818_Arg921del | |||||||
cDNA_position | 2457-2768 | |||||||
CDS_position | 2452-2763 | |||||||
Protein_position | 818-921 | |||||||
Exon_number | 8/10 | |||||||
Codon_change | TCTGACTATCGATCAAATAATGTCCTCGACGAGACGGCTCACAAGAACTATGTAGCATTGGCTCCAGGAGAGTATTTTGTTCGAGCAATCCTTCAGGAATACAAGTTCTCACCGTCAACATCCACCATTGTTGTCAAGGAAGGACAACACGAGAATGTTGTGCTCAAGGGAAAACGGGTGTCATTCAGTGCCTATGGAAAAATGAGAGAAATGTCTGGAGATGCGATGAAGGATGTGATCATTGAGGCTCTTTCCGAAGGTTGTGATCTTCATCAGTCTGAAGCCACCACCAAGGAAGATGGTACCTACCGT/- | |||||||
Amino_acid_change | SDYRSNNVLDETAHKNYVALAPGEYFVRAILQEYKFSPSTSTIVVKEGQHENVVLKGKRVSFSAYGKMREMSGDAMKDVIIEALSEGCDLHQSEATTKEDGTYR/- | |||||||
C02E11.1a.1 | VEP_consequence | inframe_deletion | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | C02E11.1a.1:c.2446_2757del | |||||||
HGVSp | CE28528:p.Ser816_Arg919del | |||||||
cDNA_position | 2449-2760 | |||||||
CDS_position | 2446-2757 | |||||||
Protein_position | 816-919 | |||||||
Exon_number | 8/10 | |||||||
Codon_change | TCTGACTATCGATCAAATAATGTCCTCGACGAGACGGCTCACAAGAACTATGTAGCATTGGCTCCAGGAGAGTATTTTGTTCGAGCAATCCTTCAGGAATACAAGTTCTCACCGTCAACATCCACCATTGTTGTCAAGGAAGGACAACACGAGAATGTTGTGCTCAAGGGAAAACGGGTGTCATTCAGTGCCTATGGAAAAATGAGAGAAATGTCTGGAGATGCGATGAAGGATGTGATCATTGAGGCTCTTTCCGAAGGTTGTGATCTTCATCAGTCTGAAGCCACCACCAAGGAAGATGGTACCTACCGT/- | |||||||
Amino_acid_change | SDYRSNNVLDETAHKNYVALAPGEYFVRAILQEYKFSPSTSTIVVKEGQHENVVLKGKRVSFSAYGKMREMSGDAMKDVIIEALSEGCDLHQSEATTKEDGTYR/- | |||||||
Isolation | Mutagen | TMP/UV | ||||||
Genetics | Map | V | ||||||
Description | Phenotype | WBPhenotype:0000154 | Paper_evidence | WBPaper00034730 | ||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | nra-4(tm2656) mutants showed reduced brood size | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Hypomorph_reduction_of_function | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Phenotype_not_observed | WBPhenotype:0000062 | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Classified as homozygous viable by the National BioResource Project of Japan. Originally classified as lethal OR sterile by the NBRP. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | FX | |||||||
WBPhenotype:0000421 | Paper_evidence | WBPaper00034730 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | No resistance to levamisole | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Hypomorph_reduction_of_function | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Affected_by | Molecule | WBMol:00004019 | Paper_evidence | WBPaper00034730 | ||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0001203 | Paper_evidence | WBPaper00034730 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | No resistance to nicotine | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Hypomorph_reduction_of_function | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0001204 | Paper_evidence | WBPaper00034730 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | No resistance to muscimol | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Hypomorph_reduction_of_function | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0001316 | Paper_evidence | WBPaper00034730 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Agonist-induced postsynaptic currents measured in whole-cell voltage-clamped body muscle cells were normal | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Hypomorph_reduction_of_function | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0001685 | Paper_evidence | WBPaper00034730 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Post-synaptic expression levels of immunostained UNC-29 were unaffected | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Hypomorph_reduction_of_function | Paper_evidence | WBPaper00034730 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Reference | WBPaper00034730 | |||||||
Remark | 2959/2960-3271/3272 (312 bp deletion) | |||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
Method | NBP_knockout_allele |