WormBase Tree Display for Variation: WBVar00236432
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| WBVar00236432 | Name | Public_name | WBVar00236432 | ||
|---|---|---|---|---|---|
| Other_name | pas48208 | ||||
| C54D2.5a.2:c.639-78dup | |||||
| C54D2.5a.1:c.639-78dup | |||||
| C54D2.5g.1:c.639-78dup | |||||
| C54D2.5e.1:c.639-78dup | |||||
| C54D2.5c.1:c.639-78dup | |||||
| C54D2.5d.1:c.639-78dup | |||||
| C54D2.5a.3:c.639-78dup | |||||
| HGVSg | CHROMOSOME_X:g.7856833_7856834insT | ||||
| Sequence_details | SMap | S_parent | Sequence | C54D2 | |
| Flanking_sequences | cgcccataattgaacaccaacaattccaaaaatgaagaaaacgaaaaaacataaaagaagcacatttccaagcatgggtaatgtgtcgagtaacaaattgactaaaatcctcatcgatggtattcgattgaccgctcgaagcggcctcagtactcgaaccgttctgattgctgttaaattgatgtttcctccgagatactcgtgtaatacaaactcagcgattctgtaaaaaattaaattaattcaaattcgtgtatcgaggtgccagcgtatcgaggtgccaaacacatcgttactgtg | tttttttattattgctgcaatgtttttattagtctcaaaatatccttgaaattccaaaataacatattcaaaaaacataagttttataaatttatcaacggccgaacatgagttgttagttaactattacattattttgcatattttaagccttttaaatttgataactttgtggtcctataacatatttttgccgccatggaactgtcaagttaattgaaatttacctgaatttagaaaacaattttgaagtttttaagtgatatcattatgaaattacttttttttaaatactttttt | |||
| Mapping_target | C54D2 | ||||
| Type_of_mutation | Insertion | T | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00000367 | |||
| Transcript | C54D2.5a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5a.1:c.639-78dup | ||||
| Intron_number | 8/31 | ||||
| C54D2.5g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5g.1:c.639-78dup | ||||
| Intron_number | 6/28 | ||||
| C54D2.5a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5a.2:c.639-78dup | ||||
| Intron_number | 9/32 | ||||
| C54D2.5c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5c.1:c.639-78dup | ||||
| Intron_number | 7/30 | ||||
| C54D2.5a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5a.3:c.639-78dup | ||||
| Intron_number | 7/30 | ||||
| C54D2.5d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5d.1:c.639-78dup | ||||
| Intron_number | 7/31 | ||||
| C54D2.5e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5e.1:c.639-78dup | ||||
| Intron_number | 7/30 | ||||
| Method | WGS_Pasadena_Quinlan |
