WormBase Tree Display for Variation: WBVar00144830
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WBVar00144830 | Evidence | Paper_evidence | WBPaper00005353 | ||||||
---|---|---|---|---|---|---|---|---|---|
Person_evidence | WBPerson499 | ||||||||
Name | Public_name | e2432 | |||||||
Other_name | F45E10.1d.1:c.1291_1456+159del | ||||||||
F45E10.1c.1:c.1693_1858+159del | |||||||||
F45E10.1g.1:c.1693_1858+159del | |||||||||
F45E10.1e.1:c.433_598+159del | |||||||||
F45E10.1b.1:c.1693_1858+159del | |||||||||
F45E10.1a.1:c.1693_1858+159del | |||||||||
F45E10.1h.1:c.1693_1858+159del | |||||||||
F45E10.1f.1:c.769_934+159del | |||||||||
HGVSg | CHROMOSOME_II:g.11067242_11067616del | ||||||||
Sequence_details | SMap | S_parent | Sequence | F45E10 | |||||
Flanking_sequences | atccgacaaccaccaacgtacgatgttctt | aaactttttcttttgataatttttgaatct | |||||||
Mapping_target | F45E10 | ||||||||
Type_of_mutation | Deletion | ||||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00004572 | ||||||||
Laboratory | CB | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00006788 | |||||||
Transcript | F45E10.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | ||||||||
HGVSc | F45E10.1b.1:c.1693_1858+159del | ||||||||
cDNA_position | 1693-? | ||||||||
CDS_position | 1693-? | ||||||||
Protein_position | 565-? | ||||||||
Intron_number | 12-13/22 | ||||||||
Exon_number | 12-13/23 | ||||||||
F45E10.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F45E10.1a.1:c.1693_1858+159del | ||||||||
cDNA_position | 1734-? | ||||||||
CDS_position | 1693-? | ||||||||
Protein_position | 565-? | ||||||||
Intron_number | 13-14/23 | ||||||||
Exon_number | 13-14/24 | ||||||||
F45E10.1f.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F45E10.1f.1:c.769_934+159del | ||||||||
cDNA_position | 769-? | ||||||||
CDS_position | 769-? | ||||||||
Protein_position | 257-? | ||||||||
Intron_number | 5-6/15 | ||||||||
Exon_number | 5-6/16 | ||||||||
F45E10.1c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F45E10.1c.1:c.1693_1858+159del | ||||||||
cDNA_position | 1693-? | ||||||||
CDS_position | 1693-? | ||||||||
Protein_position | 565-? | ||||||||
Intron_number | 12-13/23 | ||||||||
Exon_number | 12-13/24 | ||||||||
F45E10.1e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F45E10.1e.1:c.433_598+159del | ||||||||
cDNA_position | 433-? | ||||||||
CDS_position | 433-? | ||||||||
Protein_position | 145-? | ||||||||
Intron_number | 4-5/14 | ||||||||
Exon_number | 4-5/15 | ||||||||
F45E10.1d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F45E10.1d.1:c.1291_1456+159del | ||||||||
cDNA_position | 1488-? | ||||||||
CDS_position | 1291-? | ||||||||
Protein_position | 431-? | ||||||||
Intron_number | 10-11/20 | ||||||||
Exon_number | 10-11/21 | ||||||||
F45E10.1g.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F45E10.1g.1:c.1693_1858+159del | ||||||||
cDNA_position | 1693-? | ||||||||
CDS_position | 1693-? | ||||||||
Protein_position | 565-? | ||||||||
Intron_number | 12-13/21 | ||||||||
Exon_number | 12-13/22 | ||||||||
F45E10.1h.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F45E10.1h.1:c.1693_1858+159del | ||||||||
cDNA_position | 1693-? | ||||||||
CDS_position | 1693-? | ||||||||
Protein_position | 565-? | ||||||||
Intron_number | 12-13/21 | ||||||||
Exon_number | 12-13/22 | ||||||||
Genetics | Interpolated_map_position | II | 3.16437 | ||||||
Mapping_data | In_pos_neg_data | 4533 | |||||||
4534 | |||||||||
4535 | |||||||||
4536 | |||||||||
4539 | |||||||||
Description | Phenotype | WBPhenotype:0000016 | Paper_evidence | WBPaper00031872 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | % animals paralyzed after 60 min on 1mM aldicarb was significantly higher than % N2 animals paralyzed. | Paper_evidence | WBPaper00031872 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Affected_by | Molecule | WBMol:00003650 | Paper_evidence | WBPaper00031872 | |||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0007833 | PATO:0001549 | Paper_evidence | WBPaper00031872 | ||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000195 | Paper_evidence | WBPaper00051452 | |||||||
Curator_confirmed | WBPerson7124 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0006865 | PATO:0000460 | Paper_evidence | WBPaper00051452 | ||||
Curator_confirmed | WBPerson7124 | ||||||||
WBPhenotype:0000420 | Paper_evidence | WBPaper00031872 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | % animals paralyzed after 60 min on 200mM levamisole was significantly higher than % N2 animals paralyzed under same conditions. | Paper_evidence | WBPaper00031872 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Affected_by | Molecule | WBMol:00004019 | Paper_evidence | WBPaper00031872 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Reference (3) | |||||||||
Method | Deletion_allele |