WormBase Tree Display for Variation: WBVar00144032
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WBVar00144032 | Name | Public_name | e1482 | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence_details | SeqStatus | Pending_curation | |||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00004344 | ||||||||
WBStrain00030738 | |||||||||
Laboratory | CB | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00004860 | |||||||
Interactor (87) | |||||||||
Genetics | Mapping_data | In_2_point | 1534 | ||||||
3709 | |||||||||
In_multi_point | 843 | ||||||||
1360 | |||||||||
1719 | |||||||||
In_pos_neg_data | 3710 | ||||||||
3711 | |||||||||
3712 | |||||||||
3713 | |||||||||
3714 | |||||||||
Description | Phenotype | WBPhenotype:0000324 | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | short adult and late larvae. e1482/Df similar | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Ease_of_scoring | ES2_Difficult_to_score | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_not_observed | WBPhenotype:0000505 | Paper_evidence | WBPaper00001328 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Males are not Ram. | Paper_evidence | WBPaper00001328 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0006941 | PATO:0000460 | Paper_evidence | WBPaper00001328 | ||||
Curator_confirmed | WBPerson712 | ||||||||
Life_stage | WBls:0000056 | PATO:0000460 | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Temperature | 20C | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Genotype | him-5(e1490) | Paper_evidence | WBPaper00001328 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001857 | Paper_evidence | WBPaper00031023 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
Remark | Abrogation of the TGF-beta pathway, as represented by sma-6(e1482), did not affect pgp-5 gene expression induction upon (Pseudomonas aeruginosa strain) PA14 infection. The fold increase in pgp-5 mRNA in sma-6(e1482), as determined by qRT-PCR, were not statistically different from wild type (Supplemental Results). | Paper_evidence | WBPaper00031023 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
Reference | WBPaper00026334 | ||||||||
WBPaper00001328 | |||||||||
WBPaper00015420 | |||||||||
WBPaper00031023 | |||||||||
WBPaper00061175 | |||||||||
Remark | Created by WBPerson51134 from the NN_VFP_triage_pipeline | ||||||||
Variation stub/paper connection generated from the May 2021 NN VFP dataset. | |||||||||
Method | Allele |