WormBase Tree Display for Variation: WBVar00143036
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WBVar00143036 | Evidence | Paper_evidence | WBPaper00006063 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPaper00005177 | |||||||||
Name | Public_name | e207 | |||||||
Other_name | F46E10.9.1:c.10C>T | ||||||||
CE20819:p.Arg4Ter | |||||||||
F46E10.9.2:c.10C>T | |||||||||
HGVSg | CHROMOSOME_V:g.6513336G>A | ||||||||
Sequence_details | SMap | S_parent | Sequence | F46E10 | |||||
Flanking_sequences | ataaaacaagtcaattccagaatgctgctc | gattgctcgccgtgctcggacttttcgccg | |||||||
Mapping_target | F46E10 | ||||||||
Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00006063 | ||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00004128 | ||||||||
Laboratory | CB | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00001073 | |||||||
Transcript | F46E10.9.2 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | ||||||||
HGVSc | F46E10.9.2:c.10C>T | ||||||||
HGVSp | CE20819:p.Arg4Ter | ||||||||
cDNA_position | 164 | ||||||||
CDS_position | 10 | ||||||||
Protein_position | 4 | ||||||||
Exon_number | 3/9 | ||||||||
Codon_change | Cga/Tga | ||||||||
Amino_acid_change | R/* | ||||||||
F46E10.9.1 | VEP_consequence | stop_gained | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F46E10.9.1:c.10C>T | ||||||||
HGVSp | CE20819:p.Arg4Ter | ||||||||
cDNA_position | 11 | ||||||||
CDS_position | 10 | ||||||||
Protein_position | 4 | ||||||||
Exon_number | 2/8 | ||||||||
Codon_change | Cga/Tga | ||||||||
Amino_acid_change | R/* | ||||||||
Genetics | Interpolated_map_position | V | -0.000884327 | ||||||
Description | Phenotype | WBPhenotype:0000037 | Paper_evidence | WBPaper00053410 | |||||
Curator_confirmed | WBPerson3569 | ||||||||
Remark | Short (Spherical) eggs, Figure 2 | Paper_evidence | WBPaper00053410 | ||||||
Curator_confirmed | WBPerson3569 | ||||||||
WBPhenotype:0000505 | Paper_evidence | WBPaper00005177 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
Remark | "Strong Dpy and Ram phenotypes were found in e33, e207, e504, e752, e794, e1180 and s261 alleles (Fig. 1 B, J)." | Paper_evidence | WBPaper00005177 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
EQ_annotations | GO_term | GO:0048666 | PATO:0000460 | Paper_evidence | WBPaper00005177 | ||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0000583 | Paper_evidence | WBPaper00005177 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
Remark | "Strong Dpy and Ram phenotypes were found in e33, e207, e504, e752, e794, e1180 and s261 alleles (Fig. 1 B, J)." | Paper_evidence | WBPaper00005177 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
Reference | WBPaper00005177 | ||||||||
WBPaper00006063 | |||||||||
WBPaper00053410 | |||||||||
Method | Substitution_allele |