WormBase Tree Display for Variation: WBVar00142908
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WBVar00142908 | Evidence | Paper_evidence | WBPaper00006395 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | e12 | |||||||
Other_name | CE35021:p.Gly149Glu | ||||||||
T21D12.2b.1:c.446G>A | |||||||||
T21D12.2a.1:c.446G>A | |||||||||
CE49091:p.Gly149Glu | |||||||||
HGVSg | CHROMOSOME_IV:g.258714C>T | ||||||||
Sequence_details | SMap | S_parent | Sequence | T21D12 | |||||
Flanking_sequences | aatgtccaactggagctccaggaccaccag | acttccaggtaaatttgaattgcatcagga | |||||||
Mapping_target | T21D12 | ||||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00006395 | ||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00004077 | ||||||||
WBStrain00026744 | |||||||||
WBStrain00027172 | |||||||||
WBStrain00027245 | |||||||||
WBStrain00027276 | |||||||||
WBStrain00033525 | |||||||||
WBStrain00035533 | |||||||||
WBStrain00036391 | |||||||||
WBStrain00049370 | |||||||||
WBStrain00058086 | |||||||||
Laboratory | CB | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00001071 | |||||||
Transcript | T21D12.2b.1 (12) | ||||||||
T21D12.2a.1 (12) | |||||||||
Interactor | WBInteraction000503698 | ||||||||
WBInteraction000537309 | |||||||||
Genetics | Interpolated_map_position | IV | -26.772 | ||||||
Mapping_data | In_2_point (16) | ||||||||
In_multi_point (25) | |||||||||
In_pos_neg_data | 2140 | ||||||||
3687 | |||||||||
Description | Phenotype (16) | ||||||||
Phenotype_not_observed | WBPhenotype:0000039 | Paper_evidence | WBPaper00032031 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Life span of animals were not greater than that of wild type worms in the absence of infection. | Paper_evidence | WBPaper00032031 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Genotype | Pnlp-29::GFP | Paper_evidence | WBPaper00032031 | |||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000505 | Paper_evidence | WBPaper00001328 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Males are not Ram. | Paper_evidence | WBPaper00001328 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0006941 | PATO:0000460 | Paper_evidence | WBPaper00001328 | ||||
Curator_confirmed | WBPerson712 | ||||||||
Life_stage | WBls:0000056 | PATO:0000460 | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Temperature | 20C | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Genotype | him-5(e1490) | Paper_evidence | WBPaper00001328 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001426 | Paper_evidence | WBPaper00004883 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Genotype | arIs37 | Paper_evidence | WBPaper00004883 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Disease_info | Models_disease | DOID:37 | |||||||
Models_disease_in_annotation | WBDOannot00001177 | ||||||||
Reference (15) | |||||||||
Method | Substitution_allele |