WormBase Tree Display for Variation: WBVar00124215
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WBVar00124215 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00124215 | ||||
Other_name | cbs59736 | |||||
cb59736 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrIII:g.8108071T>G | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4044a | ||
Flanking_sequences | tcatatttttgaggaatatctggta | aaaaaaggataagtggaagagaaac | ||||
Mapping_target | cb25.fpc4044a | |||||
Type_of_mutation | Substitution | A | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | GTAC | AfaI, Csp6I, RsaI | 714 237 49 | ||
GCNNGC | BstC8I, Cac8I | 891 109 | ||||
CAC | HindI | 85 77 70 62 60 59 59 55 55 51 46 45 41 34 25 25 24 24 21 19 16 13 13 12 5 2 2 | ||||
Polymorphic_strain_digest | GTAC | AfaI, Csp6I, RsaI | 498 237 216 49 | |||
GCNNGC | BstC8I, Cac8I | 1000 | ||||
CAC | HindI | 85 77 70 62 60 59 59 55 55 51 46 45 41 34 25 25 24 24 21 19 16 13 13 10 5 2 2 2 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00036546 | ||||
Transcript | CBG16666a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG16666a.1:c.3663+47T>G | |||||
Intron_number | 17/18 | |||||
CBG16666b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG16666b.1:c.3531+47T>G | |||||
Intron_number | 17/17 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |