WormBase Tree Display for Variation: WBVar00116389
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| WBVar00116389 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00116389 | ||||
| Other_name | cbs51910 | |||||
| cb51910 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.4378227G>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2441 | ||
| Flanking_sequences | ttcttctatacaaccatctctttcg | tgcatccattcatcgcacggcttca | ||||
| Mapping_target | cb25.fpc2441 | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GACGTC | AatII, ZraI | 585 415 | ||
| GRCGYC | AcyI, BsaHI, BstACI, Hin1I, Hsp92I | 478 418 104 | ||||
| ATGCAT | BfrBI, EcoT22I, Mph1103I, NsiI, Ppu10I, Zsp2I | 1000 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 469 212 111 109 33 31 25 10 | ||||
| CAC | HindI | 176 98 91 80 72 62 62 61 42 41 37 36 28 27 24 18 17 15 8 5 | ||||
| CGWCG | Hpy99I | 563 416 21 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 418 299 144 139 | ||||
| Polymorphic_strain_digest | GACGTC | AatII, ZraI | 1000 | |||
| GRCGYC | AcyI, BsaHI, BstACI, Hin1I, Hsp92I | 896 104 | ||||
| ATGCAT | BfrBI, EcoT22I, Mph1103I, NsiI, Ppu10I, Zsp2I | 502 498 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 387 212 111 109 82 33 31 25 10 | ||||
| CAC | HindI | 176 98 91 80 72 62 62 61 51 42 41 37 28 27 24 18 17 8 5 | ||||
| CGWCG | Hpy99I | 528 451 21 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 557 299 144 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00032251 | ||||
| Transcript | CBG11064c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG11064c.1:c.*1700C>T | |||||
| cDNA_position | 12361 | |||||
| Exon_number | 46/46 | |||||
| CBG11064g.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG11064g.1:c.12090C>T | |||||
| HGVSp | CBP43908.1:p.His4030%3D | |||||
| cDNA_position | 12090 | |||||
| CDS_position | 12090 | |||||
| Protein_position | 4030 | |||||
| Exon_number | 45/45 | |||||
| Codon_change | caC/caT | |||||
| Amino_acid_change | H | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
