WormBase Tree Display for Variation: WBVar00116380
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WBVar00116380 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00116380 | ||||
Other_name | cbs51901 | |||||
cb51901 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrX:g.12755889A>G | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2397 | ||
Flanking_sequences | agaatggaaagtgaagaagggagat | aagctcatctttaccgccaagaggg | ||||
Mapping_target | cb25.fpc2397 | |||||
Type_of_mutation | Substitution | A | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CAC | HindI | 175 146 111 102 90 46 41 41 39 31 27 26 23 22 20 19 14 7 6 5 4 3 2 | ||
Polymorphic_strain_digest | CAC | HindI | 175 146 111 102 90 41 41 39 31 29 27 26 23 22 20 19 17 14 7 6 5 4 3 2 | |||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00032220 | ||||
Transcript | CBG11009a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG11009a.1:c.253+77T>C | |||||
Intron_number | 3/26 | |||||
CBG11009b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG11009b.1:c.253+77T>C | |||||
Intron_number | 3/26 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |