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WormBase Tree Display for Variation: WBVar00116380

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Name Class

WBVar00116380EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00116380
Other_namecbs51901
cb51901Paper_evidenceWBPaper00055507
HGVSgchrX:g.12755889A>G
Sequence_detailsSMapS_parentSequencecb25.fpc2397
Flanking_sequencesagaatggaaagtgaagaagggagataagctcatctttaccgccaagaggg
Mapping_targetcb25.fpc2397
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestCACHindI175 146 111 102 90 46 41 41 39 31 27 26 23 22 20 19 14 7 6 5 4 3 2
Polymorphic_strain_digestCACHindI175 146 111 102 90 41 41 39 31 29 27 26 23 22 20 19 17 14 7 6 5 4 3 2
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00032220
TranscriptCBG11009a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG11009a.1:c.253+77T>C
Intron_number3/26
CBG11009b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG11009b.1:c.253+77T>C
Intron_number3/26
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP