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WormBase Tree Display for Variation: WBVar00113240

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Name Class

WBVar00113240EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00113240
Other_namecbs48761
cb48761Paper_evidenceWBPaper00055507
HGVSgchrI:g.6127801A>G
Sequence_detailsSMapS_parentSequencecb25.fpc1417
Flanking_sequencescaaagaaaatgacaggttttcgaatatgacacggatcaaatccgacaggg
Mapping_targetcb25.fpc1417
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestTTTAAAAhaIII, DraI663 249 88
CCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI416 414 170
CACHindI298 119 82 79 70 43 39 38 35 28 28 27 23 20 15 12 10 8 8 5 3 3 3 2 2
TTAAMseI, Tru1I, Tru9I467 248 189 66 23 7
Polymorphic_strain_digestTTTAAAAhaIII, DraI664 248 88
CCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI830 170
CACHindI298 108 82 79 70 43 39 38 35 28 28 27 23 20 20 15 11 10 8 5 3 3 3 2 2
TTAAMseI, Tru1I, Tru9I468 247 189 66 23 7
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00030075
TranscriptCBG08244a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG08244a.1:c.139-122T>C
Intron_number2/8
CBG08244b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG08244b.1:c.139-122T>C
Intron_number1/7
CBG08244c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG08244c.1:c.139-122T>C
Intron_number2/9
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP