WormBase Tree Display for Variation: WBVar00113240
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WBVar00113240 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00113240 | ||||
Other_name | cbs48761 | |||||
cb48761 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrI:g.6127801A>G | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc1417 | ||
Flanking_sequences | caaagaaaatgacaggttttcgaat | atgacacggatcaaatccgacaggg | ||||
Mapping_target | cb25.fpc1417 | |||||
Type_of_mutation | Substitution | A | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | TTTAAA | AhaIII, DraI | 663 249 88 | ||
CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 416 414 170 | ||||
CAC | HindI | 298 119 82 79 70 43 39 38 35 28 28 27 23 20 15 12 10 8 8 5 3 3 3 2 2 | ||||
TTAA | MseI, Tru1I, Tru9I | 467 248 189 66 23 7 | ||||
Polymorphic_strain_digest | TTTAAA | AhaIII, DraI | 664 248 88 | |||
CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 830 170 | ||||
CAC | HindI | 298 108 82 79 70 43 39 38 35 28 28 27 23 20 20 15 11 10 8 5 3 3 3 2 2 | ||||
TTAA | MseI, Tru1I, Tru9I | 468 247 189 66 23 7 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00030075 | ||||
Transcript | CBG08244a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG08244a.1:c.139-122T>C | |||||
Intron_number | 2/8 | |||||
CBG08244b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG08244b.1:c.139-122T>C | |||||
Intron_number | 1/7 | |||||
CBG08244c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG08244c.1:c.139-122T>C | |||||
Intron_number | 2/9 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |