WormBase Tree Display for Variation: WBVar00110644
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WBVar00110644 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00110644 | ||||
Other_name | cbs46165 | |||||
cb46165 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrIV:g.6699836C>T | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0110 | ||
Flanking_sequences | tttttcttgtctaatgacttctgaa | tacattattccaggtgataactccc | ||||
Mapping_target | cb25.fpc0110 | |||||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 280 253 163 114 100 90 | ||
GTAC | AfaI, Csp6I, RsaI | 501 464 35 | ||||
CATATG | FauNDI, NdeI | 1000 | ||||
GTNAC | MaeIII | 676 314 10 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 231 163 155 114 100 78 53 45 38 12 11 | ||||
WGTACW | TatI | 501 499 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 253 163 149 131 114 100 90 | |||
GTAC | AfaI, Csp6I, RsaI | 536 464 | ||||
CATATG | FauNDI, NdeI | 740 260 | ||||
GTNAC | MaeIII | 478 314 198 10 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 163 155 149 114 100 82 78 53 45 38 12 11 | ||||
WGTACW | TatI | 1000 | ||||
Natural_variant | ||||||
Origin (5) | ||||||
Affects | Gene | WBGene00027947 | ||||
Transcript | CBG05508a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG05508a.1:c.5479-14G>A | |||||
Intron_number | 27/28 | |||||
CBG05508b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG05508b.1:c.5392-14G>A | |||||
Intron_number | 25/26 | |||||
CBG05508c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG05508c.1:c.5377-14G>A | |||||
Intron_number | 26/26 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |