WormBase Tree Display for Variation: WBVar00110644

WBVar00110644 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00110644
    Other_name: cbs46165
      cb46165 Paper_evidence: WBPaper00055507
    HGVSg: chrIV:g.6699836C>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0110
    Flanking_sequences: tttttcttgtctaatgacttctgaa tacattattccaggtgataactccc
    Mapping_target: cb25.fpc0110
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 280 253 163 114 100 90
        GTAC AfaI, Csp6I, RsaI 501 464 35
        CATATG FauNDI, NdeI 1000
        GTNAC MaeIII 676 314 10
        AATT Sse9I, TasI, Tsp509I, TspEI 231 163 155 114 100 78 53 45 38 12 11
        WGTACW TatI 501 499
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 253 163 149 131 114 100 90
        GTAC AfaI, Csp6I, RsaI 536 464
        CATATG FauNDI, NdeI 740 260
        GTNAC MaeIII 478 314 198 10
        AATT Sse9I, TasI, Tsp509I, TspEI 163 155 149 114 100 82 78 53 45 38 12 11
        WGTACW TatI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027947
    Transcript: CBG05508a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05508a.1:c.5479-14G>A
        Intron_number: 27/28
      CBG05508b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05508b.1:c.5392-14G>A
        Intron_number: 25/26
      CBG05508c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05508c.1:c.5377-14G>A
        Intron_number: 26/26
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP