WormBase Tree Display for Variation: WBVar00110643
expand all nodes | collapse all nodes | view schema
WBVar00110643 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00110643 | ||||
Other_name | cbs46164 | |||||
cb46164 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrIV:g.6700134C>T | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0110 | ||
Flanking_sequences | cgcgatcgcctgaaaccgtccagtt | cttccgaaacgagctagttcggaaa | ||||
Mapping_target | cb25.fpc0110 | |||||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | GTAC | AfaI, Csp6I, RsaI | 799 166 35 | ||
GTNAC | MaeIII | 765 209 16 10 | ||||
WGTACW | TatI | 797 203 | ||||
Polymorphic_strain_digest | GTAC | AfaI, Csp6I, RsaI | 834 166 | |||
GTNAC | MaeIII | 478 287 209 16 10 | ||||
WGTACW | TatI | 1000 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00027947 | ||||
Transcript | CBG05508a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | |||||
HGVSc | CBG05508a.1:c.5310G>A | |||||
HGVSp | CBP38433.1:p.Leu1770%3D | |||||
cDNA_position | 7580 | |||||
CDS_position | 5310 | |||||
Protein_position | 1770 | |||||
Exon_number | 26/29 | |||||
Codon_change | ttG/ttA | |||||
Amino_acid_change | L | |||||
CBG05508b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG05508b.1:c.5284-160G>A | |||||
Intron_number | 24/26 | |||||
CBG05508c.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | CBG05508c.1:c.5208G>A | |||||
HGVSp | CBP43606.1:p.Leu1736%3D | |||||
cDNA_position | 7478 | |||||
CDS_position | 5208 | |||||
Protein_position | 1736 | |||||
Exon_number | 25/27 | |||||
Codon_change | ttG/ttA | |||||
Amino_acid_change | L | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |