WormBase Tree Display for Variation: WBVar00108887

WBVar00108887 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00108887
    Other_name: cbs44408
    HGVSg: chrI:g.4709733A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0071c2
    Flanking_sequences: tttatatttcaggctgccaatgctgaaattccaggcgcaacttctgtaag ttatcgtttttggtttacagtgaaatacattttcaggcgcctgatccagt
    Mapping_target: cb25.fpc0071c2
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCGC AciI 1000
        GCGC AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI 486 268 193 53
        CTNAG BstDEI, DdeI 593 361 46
        GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 344 277 213 121 45
        CAC HindI 186 125 120 76 69 69 66 61 53 29 28 25 20 18 16 11 10 8 4 4 2
        CTYRAG SmlI 683 317
        GCSGC TauI 1000
      Polymorphic_strain_digest: CCGC AciI 517 483
        GCGC AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI 539 268 193
        CTNAG BstDEI, DdeI 954 46
        GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 344 277 191 121 45 22
        CAC HindI 186 125 87 76 69 69 66 61 53 33 29 28 25 20 18 16 11 10 8 4 4 2
        CTYRAG SmlI 593 317 90
        GCSGC TauI 513 487
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00086661
    Transcript: CBG25247.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: CBG25247.1:c.78+6T>G
        Intron_number: 1/2
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP