WormBase Tree Display for Variation: WBVar00108799

WBVar00108799 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00108799
    Other_name: cbs44320
    HGVSg: chrI:g.5034437G>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0071c2
    Flanking_sequences: cacgatggctatccctgggcagcagatgctgatgataacacaatttcttt cgttctgatgtggccgccttccactctcagtaagtttctgttaaatattt
    Mapping_target: cb25.fpc0071c2
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AATT Sse9I, TasI, Tsp509I, TspEI 210 170 141 130 88 87 61 30 28 22 21 12
      Polymorphic_strain_digest: AATT Sse9I, TasI, Tsp509I, TspEI 351 170 130 88 87 61 30 28 22 21 12
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00270402
    Transcript: CBG29974.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG29974.1:c.*376C>T
        cDNA_position: 1633
        Exon_number: 13/14
      CBG29974.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG29974.2:c.*415C>T
        cDNA_position: 1672
        Exon_number: 12/13
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP