WormBase Tree Display for Variation: WBVar00108770
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WBVar00108770 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00108770 | ||||
Other_name | cbs44291 | |||||
HGVSg | chrI:g.5381686C>T | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0071c2 | ||
Flanking_sequences | gtttaatcgaattcgccaagctcttgaaactggacaccctgacgacatga | tgagttttattaaagcgaaaatgaagttatattttgtttttcaggtcaaa | ||||
Mapping_target | cb25.fpc0071c2 | |||||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 542 171 157 130 | ||
GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 598 402 | ||||
GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 598 402 | ||||
GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 598 402 | ||||
CTNAG | BstDEI, DdeI | 432 394 174 | ||||
GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 600 400 | ||||
CAC | HindI | 292 168 78 75 67 48 39 36 35 35 33 26 19 17 17 7 5 3 | ||||
TCNGA | Hpy188I | 291 290 87 74 52 50 41 36 34 31 14 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 389 153 113 85 64 60 44 41 36 6 5 4 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 542 301 157 | |||
GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 1000 | ||||
GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 1000 | ||||
GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 1000 | ||||
CTNAG | BstDEI, DdeI | 826 174 | ||||
GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 1000 | ||||
CAC | HindI | 292 168 92 78 67 48 39 36 35 35 33 26 19 15 7 5 3 2 | ||||
TCNGA | Hpy188I | 332 290 87 74 52 50 36 34 31 14 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 389 153 149 113 60 44 41 36 6 5 4 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00026596 | ||||
Transcript | CBG03815.1 | VEP_consequence | splice_donor_variant | |||
VEP_impact | HIGH | |||||
HGVSc | CBG03815.1:c.1768+1G>A | |||||
Intron_number | 12/15 | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |