WormBase Tree Display for Variation: WBVar00108768
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| WBVar00108768 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name (3) | ||||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0071c2 | ||
| Flanking_sequences | tcagagctcgtggtgcagtgcaactgaatatagaagaagaacaagataac | aagtgtttaatcgaattcgccaagctcttgaaactggacaccctgacgac | ||||
| Mapping_target | cb25.fpc0071c2 | |||||
| Type_of_mutation | Substitution | G | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 487 185 171 157 | ||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 543 457 | ||||
| GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 543 457 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 543 457 | ||||
| CTNAG | BstDEI, DdeI | 449 432 119 | ||||
| GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 545 455 | ||||
| CAC | HindI | 292 168 107 75 67 48 39 36 35 35 19 17 17 11 8 7 7 5 4 3 | ||||
| TCNGA | Hpy188I | 291 290 107 74 50 41 36 34 32 31 14 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 334 153 113 96 85 64 60 44 36 6 5 4 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 487 356 157 | |||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 1000 | ||||
| GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 1000 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 1000 | ||||
| CTNAG | BstDEI, DdeI | 881 119 | ||||
| GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 1000 | ||||
| CAC | HindI | 292 168 107 92 67 48 39 36 35 35 19 15 11 8 7 7 5 4 3 2 | ||||
| TCNGA | Hpy188I | 332 290 107 74 50 36 34 32 31 14 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 334 153 149 113 96 60 44 36 6 5 4 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00026596 | ||||
| Transcript | CBG03815.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG03815.1:c.1714G>C | |||||
| HGVSp | CBP36950.1:p.Glu572Gln | |||||
| cDNA_position | 1769 | |||||
| CDS_position | 1714 | |||||
| Protein_position | 572 | |||||
| Exon_number | 12/16 | |||||
| Codon_change | Gaa/Caa | |||||
| Amino_acid_change | E/Q | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
