WormBase Tree Display for Variation: WBVar00108753
expand all nodes | collapse all nodes | view schema
WBVar00108753 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00108753 | ||||
Other_name | cbs44274 | |||||
HGVSg | chrI:g.5495050C>A | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0071c2 | ||
Flanking_sequences | aatttttgaattttcgacttttttgttatcctggattgtcggatttatgg | tttctggatttcagaatttcaggattcttgatttccaggtttccggaatt | ||||
Mapping_target | cb25.fpc0071c2 | |||||
Type_of_mutation | Substitution | G | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 354 295 278 66 7 | ||
TCGA | EsaBC3I, TaqI, TthHB8I | 279 253 126 112 100 66 57 7 | ||||
TCNNGA | Hpy178III, Hpy188III | 170 106 92 81 65 52 50 46 40 39 31 26 24 23 23 22 16 16 16 10 8 8 8 7 7 7 7 | ||||
Polymorphic_strain_digest | TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 649 278 66 7 | |||
TCGA | EsaBC3I, TaqI, TthHB8I | 279 253 157 126 112 66 7 | ||||
TCNNGA | Hpy178III, Hpy188III | 170 106 92 65 52 50 48 46 40 39 33 31 26 24 23 23 22 16 16 16 10 8 8 8 7 7 7 7 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00026574 | ||||
Transcript | CBG03789.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG03789.1:c.420-542G>T | |||||
Intron_number | 2/4 | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |