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WormBase Tree Display for Variation: WBVar00108753

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Name Class

WBVar00108753EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00108753
Other_namecbs44274
HGVSgchrI:g.5495050C>A
Sequence_detailsSMapS_parentSequencecb25.fpc0071c2
Flanking_sequencesaatttttgaattttcgacttttttgttatcctggattgtcggatttatggtttctggatttcagaatttcaggattcttgatttccaggtttccggaatt
Mapping_targetcb25.fpc0071c2
Type_of_mutationSubstitutionGT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestTTCGAAAsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI354 295 278 66 7
TCGAEsaBC3I, TaqI, TthHB8I279 253 126 112 100 66 57 7
TCNNGAHpy178III, Hpy188III170 106 92 81 65 52 50 46 40 39 31 26 24 23 23 22 16 16 16 10 8 8 8 7 7 7 7
Polymorphic_strain_digestTTCGAAAsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI649 278 66 7
TCGAEsaBC3I, TaqI, TthHB8I279 253 157 126 112 66 7
TCNNGAHpy178III, Hpy188III170 106 92 65 52 50 48 46 40 39 33 31 26 24 23 23 22 16 16 16 10 8 8 8 7 7 7 7
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00026574
TranscriptCBG03789.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG03789.1:c.420-542G>T
Intron_number2/4
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP