WormBase Tree Display for Variation: WBVar00097712
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| WBVar00097712 | Name | Public_name | WBVar00097712 | ||
|---|---|---|---|---|---|
| Other_name | pas2571 | ||||
| haw116534 | |||||
| cewivar00073484 | |||||
| C50F2.3.1:c.1950G>A | |||||
| CE08909:p.Ala650= | |||||
| HGVSg | CHROMOSOME_I:g.3880066G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | C50F2 | |
| Flanking_sequences | attcctgctaaagacgcaaaaatttttggaatataaatgttttatttttaatatatctatagcttcctgagaccaaatgttgtaaattcttgctgaaaattgacaaaaattggatttaattgaacaaaacgacgcaaaaattatagttaaaaacacttcaaaacaacaaaatttcgcgaaattcaatttttcaaacgaaaaatcacgataaaacccgataaaacccgcaaattcttcaaaattgtcattttagatgtacaatatctacatcaaaaaggtccaggaaatgtatggaatcgc | cagtgccggcccatctttgaacgagcgatttccgaattgccagaggataagtctcgagcaatgagcttgcggtatgctcagctcgagacgacggtcggagagattgaccgagcccgagcgatctacgcgcacgccgccgagatttccgatccaaaagttcatgtaaagttctgggatacgtggaaaaactttgaagttgctcatggaaacgaggcaactgttcgtgacatgcttcgtgttcgtagatcagtcgaagcgtcatacaacgtgaatgtcacactgacatctgtacaaatgcgt | |||
| Mapping_target | C50F2 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01343140 | |||
| WBVar01281135 | |||||
| WBVar00536399 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00016837 | |||
| Transcript | C50F2.3.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C50F2.3.1:c.1950G>A | ||||
| HGVSp | CE08909:p.Ala650= | ||||
| cDNA_position | 1953 | ||||
| CDS_position | 1950 | ||||
| Protein_position | 650 | ||||
| Exon_number | 8/9 | ||||
| Codon_change | gcG/gcA | ||||
| Amino_acid_change | A | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
