WormBase Tree Display for Variation: WBVar00091272

WBVar00091272 Name: Public_name: nj3
    Other_name: CE29092:p.Trp218Ter
      CE47095:p.Trp274Ter
      F57F5.5b.1:c.392delinsA
      F57F5.5a.3:c.653delinsA
      F57F5.5a.1:c.653delinsA
      CE46445:p.Trp131Ter
      F57F5.5c.1:c.821delinsA
      F57F5.5a.2:c.653delinsA
    HGVSg: CHROMOSOME_V:g.12018711delinsT
  Sequence_details: SMap: S_parent: Sequence: F57F5
    Flanking_sequences: ttcataaacgttgccatgaagatgttgtat aagtgtcctggaaataaggcagatgctgta
    Mapping_target: F57F5
    Type_of_mutation: Substitution: gg rr
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00021993
      WBStrain00058217
    Laboratory: IK
    Status: Live
  Affects: Gene: WBGene00004032
    Transcript: F57F5.5b.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: F57F5.5b.1:c.392delinsA
        HGVSp: CE46445:p.Trp131Ter
        cDNA_position: 464-465
        CDS_position: 392-393
        Protein_position: 131
        Exon_number: 4/12
        Codon_change: tGG/tAG
        Amino_acid_change: W/*
      F57F5.5a.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: F57F5.5a.1:c.653delinsA
        HGVSp: CE29092:p.Trp218Ter
        cDNA_position: 675-676
        CDS_position: 653-654
        Protein_position: 218
        Exon_number: 6/14
        Codon_change: tGG/tAG
        Amino_acid_change: W/*
      F57F5.5a.2 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: F57F5.5a.2:c.653delinsA
        HGVSp: CE29092:p.Trp218Ter
        cDNA_position: 850-851
        CDS_position: 653-654
        Protein_position: 218
        Exon_number: 8/16
        Codon_change: tGG/tAG
        Amino_acid_change: W/*
      F57F5.5c.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: F57F5.5c.1:c.821delinsA
        HGVSp: CE47095:p.Trp274Ter
        cDNA_position: 821-822
        CDS_position: 821-822
        Protein_position: 274
        Exon_number: 7/14
        Codon_change: tGG/tAG
        Amino_acid_change: W/*
      F57F5.5a.3 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: F57F5.5a.3:c.653delinsA
        HGVSp: CE29092:p.Trp218Ter
        cDNA_position: 821-822
        CDS_position: 653-654
        Protein_position: 218
        Exon_number: 7/15
        Codon_change: tGG/tAG
        Amino_acid_change: W/*
    Interactor: WBInteraction000502718
      WBInteraction000502719
      WBInteraction000505135
      WBInteraction000536164
      WBInteraction000536165
  Genetics: Interpolated_map_position: V 3.58628
  Description: Phenotype (21)
  Reference: WBPaper00043908
    WBPaper00031535
    WBPaper00037875
    WBPaper00065955
  Remark: nj3 is either a W(218)Amber or W(218)Opal mutation Paper_evidence: WBPaper00025220
    Manually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00004032 Amber_UAG_or_Opal_UGA W(218) to stop Paper_evidence: WBPaper00025220
  Method: Substitution_allele