WormBase Tree Display for Variation: WBVar00056580
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WBVar00056580 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00056580 | ||||
Other_name | cbs39053 | |||||
cb39053 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrIII:g.6449681C>G | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4079a | ||
Flanking_sequences | attggataatatcacatacccagaa | gttgccccgttttcccagatgaaat | ||||
Mapping_target | cb25.fpc4079a | |||||
Type_of_mutation | Substitution | G | C | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | AACGTT | AclI, Psp1406I | 1000 | ||
CAC | HindI | 190 188 80 61 59 52 48 40 39 30 28 27 26 26 24 21 15 10 10 9 7 4 3 3 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 461 389 150 | ||||
Polymorphic_strain_digest | AACGTT | AclI, Psp1406I | 501 499 | |||
CAC | HindI | 190 188 80 62 61 59 48 40 39 30 28 27 26 26 24 21 15 10 9 7 4 3 3 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 389 351 150 110 | ||||
Natural_variant | ||||||
Origin (5) | ||||||
Affects | Gene | WBGene00037637 | ||||
Transcript | CBG18170.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
HGVSc | CBG18170.1:c.367G>C | |||||
HGVSp | CBP45072.1:p.Gly123Arg | |||||
cDNA_position | 367 | |||||
CDS_position | 367 | |||||
Protein_position | 123 | |||||
Exon_number | 1/2 | |||||
Codon_change | Ggt/Cgt | |||||
Amino_acid_change | G/R | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |