WormBase Tree Display for Variation: WBVar00056580

WBVar00056580 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00056580
    Other_name: cbs39053
      cb39053 Paper_evidence: WBPaper00055507
    HGVSg: chrIII:g.6449681C>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4079a
    Flanking_sequences: attggataatatcacatacccagaa gttgccccgttttcccagatgaaat
    Mapping_target: cb25.fpc4079a
    Type_of_mutation: Substitution: G C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AACGTT AclI, Psp1406I 1000
        CAC HindI 190 188 80 61 59 52 48 40 39 30 28 27 26 26 24 21 15 10 10 9 7 4 3 3
        ACGT HpyCH4IV, MaeII, TaiI, TscI 461 389 150
      Polymorphic_strain_digest: AACGTT AclI, Psp1406I 501 499
        CAC HindI 190 188 80 62 61 59 48 40 39 30 28 27 26 26 24 21 15 10 9 7 4 3 3
        ACGT HpyCH4IV, MaeII, TaiI, TscI 389 351 150 110
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00037637
    Transcript: CBG18170.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG18170.1:c.367G>C
        HGVSp: CBP45072.1:p.Gly123Arg
        cDNA_position: 367
        CDS_position: 367
        Protein_position: 123
        Exon_number: 1/2
        Codon_change: Ggt/Cgt
        Amino_acid_change: G/R
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP