WormBase Tree Display for Variation: WBVar00047624

WBVar00047624 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00047624
    Other_name: cbs34595
      cb34595 Paper_evidence: WBPaper00055507
    HGVSg: chrI:g.5494920T>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0071c2
    Flanking_sequences: gatttccaggtttccggaattccggattttcaaatttcaaatttctgggttttcgcagctcgaatttcttgattcatccggtaatccgcttttcagaaat cagaaaaccagaaattcgaaaatccggtaaaccggtaatccgaaaatccggaatccggaatttggattctatgtgaaaaaggctttgcgtataagggtca
    Mapping_target: cb25.fpc0071c2
    Type_of_mutation: Substitution: A C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 484 295 148 66 7
        TCGA EsaBC3I, TaqI, TthHB8I 375 149 126 112 100 66 57 8 7
        TCNNGA Hpy178III, Hpy188III 170 113 106 81 65 56 52 50 46 40 31 26 24 23 16 16 16 10 8 8 8 7 7 7 7 7
      Polymorphic_strain_digest: TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 779 148 66 7
        TCGA EsaBC3I, TaqI, TthHB8I 375 157 149 126 112 66 8 7
        TCNNGA Hpy178III, Hpy188III 170 113 106 65 56 52 50 48 46 40 33 31 26 24 23 16 16 16 10 8 8 8 7 7 7 7 7
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00026574
    Transcript: CBG03789.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG03789.1:c.420-412A>C
        Intron_number: 2/4
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP