WormBase Tree Display for Variation: WBVar00017724
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| WBVar00017724 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00017724 | ||||
| Other_name | cbs16159 | |||||
| cb16159 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrI:g.5287518C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0071c2 | ||
| Flanking_sequences | ataaacactacaaaatatgagtggg | aaaaaattaagagctttatttggaa | ||||
| Mapping_target | cb25.fpc0071c2 | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CCANNNNNTGG | AccB7I, PflBI, PflMI, Van91I | 1000 | ||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 331 213 148 123 75 41 38 17 7 7 | ||||
| GATNNNNATC | BsaBI, Bse8I, BseJI, BsiBI, BsrBRI, MamI | 626 272 102 | ||||
| CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 1000 | ||||
| GTTAAC | BstHPI, HpaI, KspAI | 972 28 | ||||
| RGATCY | BstX2I, BstYI, MflI, PsuI, XhoII | 626 148 123 55 41 7 | ||||
| GTYRAC | HincII, HindII | 972 28 | ||||
| GANTC | HinfI | 384 165 158 135 70 51 37 | ||||
| TTAA | MseI, Tru1I, Tru9I | 507 292 147 25 15 14 | ||||
| GAWTC | TfiI | 435 205 195 165 | ||||
| Polymorphic_strain_digest | CCANNNNNTGG | AccB7I, PflBI, PflMI, Van91I | 966 34 | |||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 331 213 198 148 41 38 17 7 7 | ||||
| GATNNNNATC | BsaBI, Bse8I, BseJI, BsiBI, BsrBRI, MamI | 898 102 | ||||
| CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 966 34 | ||||
| GTTAAC | BstHPI, HpaI, KspAI | 1000 | ||||
| RGATCY | BstX2I, BstYI, MflI, PsuI, XhoII | 749 148 55 41 7 | ||||
| GTYRAC | HincII, HindII | 1000 | ||||
| GANTC | HinfI | 384 165 135 93 70 65 51 37 | ||||
| TTAA | MseI, Tru1I, Tru9I | 507 292 161 25 15 | ||||
| GAWTC | TfiI | 435 205 165 130 65 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00026620 | ||||
| Transcript | CBG03843.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG03843.1:c.2347-71G>A | |||||
| Intron_number | 6/7 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
