WormBase Tree Display for Variation: WBVar00014279
expand all nodes | collapse all nodes | view schema
| WBVar00014279 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00014279 | ||||
| Other_name | cbs12729 | |||||
| cb12729 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrV:g.17469609G>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4109 | ||
| Flanking_sequences | aacaaatataaattgtttaaaaatt | cgctcaaattacggtacctacactc | ||||
| Mapping_target | cb25.fpc4109 | |||||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CCGC | AciI | 500 282 127 91 | ||
| RAATTY | AcsI, ApoI, XapI | 263 99 86 75 69 53 44 41 40 40 38 28 28 21 20 19 11 10 9 6 | ||||
| TTTAAA | AhaIII, DraI | 508 179 143 91 79 | ||||
| CTNAG | BstDEI, DdeI | 343 309 239 109 | ||||
| TCNGA | Hpy188I | 351 346 192 111 | ||||
| TTAA | MseI, Tru1I, Tru9I | 307 143 142 116 90 63 47 37 23 17 15 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 91 74 69 64 61 61 53 44 43 41 40 40 37 31 28 28 27 23 21 20 19 15 12 11 11 11 10 9 6 | ||||
| Polymorphic_strain_digest | CCGC | AciI | 782 127 91 | |||
| RAATTY | AcsI, ApoI, XapI | 263 99 75 74 69 53 44 41 40 40 38 28 28 21 20 19 12 11 10 9 6 | ||||
| TTTAAA | AhaIII, DraI | 508 159 143 91 63 20 16 | ||||
| CTNAG | BstDEI, DdeI | 343 239 160 149 109 | ||||
| TCNGA | Hpy188I | 346 192 191 160 111 | ||||
| TTAA | MseI, Tru1I, Tru9I | 307 143 122 116 90 63 48 37 23 20 16 15 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 91 75 74 69 61 61 53 44 43 41 40 40 37 31 28 28 27 23 21 20 19 15 12 11 11 10 9 6 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00037974 | ||||
| Transcript | CBG18584a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584a.1:c.684-426C>T | |||||
| Intron_number | 6/14 | |||||
| CBG18584b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584b.1:c.684-426C>T | |||||
| Intron_number | 6/14 | |||||
| CBG18584c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584c.1:c.684-426C>T | |||||
| Intron_number | 6/13 | |||||
| CBG18584d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584d.1:c.684-426C>T | |||||
| Intron_number | 6/15 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
