WormBase Tree Display for Variation: WBVar00011259
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WBVar00011259 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00011259 | ||||
Other_name | cbs9408 | |||||
cb9408 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrIV:g.5984143C>A | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4152 | ||
Flanking_sequences | gaatggaaacagaaggcttattgga | gtgaaaaaagtagaagagatggttt | ||||
Mapping_target | cb25.fpc4152 | |||||
Type_of_mutation | Substitution | G | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 280 250 104 86 58 58 49 40 37 27 11 | ||
TTTAAA | AhaIII, DraI | 391 336 273 | ||||
CAC | HindI | 148 119 74 73 64 53 52 44 44 43 39 36 31 31 28 25 25 21 15 13 9 5 4 2 2 | ||||
TCNNGA | Hpy178III, Hpy188III | 670 226 53 51 | ||||
TTAA | MseI, Tru1I, Tru9I | 323 317 274 42 32 12 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 261 183 104 67 58 45 44 41 40 26 24 23 20 19 14 13 11 7 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 530 103 86 58 58 49 40 38 27 11 | |||
TTTAAA | AhaIII, DraI | 727 273 | ||||
CAC | HindI | 148 119 88 74 73 64 53 44 44 43 39 31 31 28 25 25 21 15 13 9 5 4 2 2 | ||||
TCNNGA | Hpy178III, Hpy188III | 504 226 166 53 51 | ||||
TTAA | MseI, Tru1I, Tru9I | 322 294 256 43 32 23 18 12 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 261 183 103 67 58 45 44 41 40 26 24 23 20 19 14 14 11 7 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects (2) | ||||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |