WormBase Tree Display for Variation: WBVar00007029
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WBVar00007029 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00007029 | ||||
Other_name | cbs5290 | |||||
cb5290 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrIII:g.10264433A>T | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0201 | ||
Flanking_sequences | attcttttaagccatatttttccag | aaacgacaagatgggtgattacgtg | ||||
Mapping_target | cb25.fpc0201 | |||||
Type_of_mutation | Substitution | T | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 274 223 199 125 103 46 23 7 | ||
TTTAAA | AhaIII, DraI | 793 172 30 5 | ||||
CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 565 153 107 98 65 12 | ||||
TCNNGA | Hpy178III, Hpy188III | 469 156 148 83 56 47 41 | ||||
GTNNAC | Hpy8I | 501 252 247 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 280 273 199 128 70 50 | ||||
TTAA | MseI, Tru1I, Tru9I | 387 213 134 90 87 39 30 16 4 | ||||
GTTTAAAC | MssI, PmeI | 995 5 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 223 199 125 106 86 81 31 29 23 21 21 17 17 14 7 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 242 223 199 125 103 46 32 23 7 | |||
TTTAAA | AhaIII, DraI | 798 172 30 | ||||
CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 565 153 107 98 77 | ||||
TCNNGA | Hpy178III, Hpy188III | 348 162 156 148 83 56 47 | ||||
GTNNAC | Hpy8I | 748 252 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 280 273 199 178 70 | ||||
TTAA | MseI, Tru1I, Tru9I | 387 213 134 94 87 39 30 16 | ||||
GTTTAAAC | MssI, PmeI | 1000 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 223 199 125 106 86 81 32 29 23 21 20 17 17 14 7 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00029076 | ||||
Transcript | CBG06881a.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG06881a.1:c.-11T>A | |||||
cDNA_position | 1 | |||||
Exon_number | 1/12 | |||||
CBG06881b.1 | VEP_consequence | 5_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG06881b.1:c.-11T>A | |||||
cDNA_position | 1 | |||||
Exon_number | 1/12 | |||||
CBG06881c.1 | VEP_consequence | 5_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG06881c.1:c.-11T>A | |||||
cDNA_position | 1 | |||||
Exon_number | 1/12 | |||||
CBG06881d.1 | VEP_consequence | 5_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG06881d.1:c.-11T>A | |||||
cDNA_position | 1 | |||||
Exon_number | 1/12 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |