WormBase Tree Display for Variation: WBVar00118064
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| WBVar00118064 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00118064 | ||||
| Other_name | cbs53585 | |||||
| cb53585 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrI:g.7157429G>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2852 | ||
| Flanking_sequences | atgtgtcaactaataaaatgtttgt | ataataggaaaggaaattaccgtta | ||||
| Mapping_target | cb25.fpc2852 | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | ACRYGT | AflIII | 662 338 | ||
| AGCT | AluI | 361 331 234 74 | ||||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 559 324 60 57 | ||||
| CTRYAG | BfmI, BstSFI, SfcI, SfeI | 625 375 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 242 204 176 168 117 42 32 19 | ||||
| AGATCT | BglII | 418 414 168 | ||||
| CGRYCG | BsaOI, Bsh1285I, BsiEI, BstMCI, McrI | 644 356 | ||||
| ACATGT | BspLU11I, PciI | 1000 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 521 479 | ||||
| CTNAG | BstDEI, DdeI | 714 222 54 10 | ||||
| RCATGY | BstNSI, NspI, XceI | 796 204 | ||||
| RGATCY | BstX2I, BstYI, MflI, PsuI, XhoII | 418 297 168 117 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 799 110 91 | ||||
| RGCY | CviJI, CviTI | 299 281 164 74 70 63 18 17 8 6 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 191 167 141 116 79 61 56 51 51 36 28 18 5 | ||||
| GTYRAC | HincII, HindII | 361 176 165 158 118 22 | ||||
| CAC | HindI | 220 114 100 75 74 74 53 50 35 33 23 21 18 18 15 14 11 10 10 8 7 6 3 2 2 2 2 | ||||
| GANTC | HinfI | 358 236 216 190 | ||||
| TCNNGA | Hpy178III, Hpy188III | 582 362 56 | ||||
| TCNGA | Hpy188I | 642 100 99 89 29 22 11 8 | ||||
| GTNNAC | Hpy8I | 277 165 158 138 118 84 38 22 | ||||
| CTYRAG | SmlI | 757 142 101 | ||||
| GAWTC | TfiI | 358 236 216 190 | ||||
| TCTAGA | XbaI | 583 417 | ||||
| Polymorphic_strain_digest (24) | ||||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00032961 | ||||
| Transcript | CBG11932.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG11932.1:c.429-139C>T | |||||
| Intron_number | 5/11 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
