WormBase Tree Display for Transcript: C48D1.5a
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| C48D1.5a | SMap | S_parent | Sequence | C48D1 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 86 | ||
| 429 | 654 | ||||
| 712 | 873 | ||||
| 1292 | 1369 | ||||
| 6306 | 6428 | ||||
| 7829 | 8130 | ||||
| 8185 | 8404 | ||||
| 8722 | 8938 | ||||
| 9877 | 10053 | ||||
| DB_info (2) | |||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Visible | Gene | WBGene00008178 | |||
| Corresponding_PCR_product | cenix:231-d9 | ||||
| mv_JC8.11 | |||||
| sjj2_C48D1.5 | |||||
| sjj_JC8.11 | |||||
| Corresponding_oligo_set (18) | |||||
| RNAi_result | WBRNAi00049567 | ||||
| WBRNAi00007311 | |||||
| WBRNAi00053898 | |||||
| WBRNAi00033790 | |||||
| WBRNAi00016356 | |||||
| Microarray_results (19) | |||||
| Brief_identification | non-coding Transcript Isoform | ||||
| Last_reviewed | 28 Apr 2014 00:00:00 | WBPerson4025 | |||
| Remark | [061017 gw3] Extended the 3' end adding an extra exon based on C.briggsae and C.remanei homology. There is a possibility that this gene extends downstream and perhaps should be merged with JC8.11, as the protein homology extends that far, but the OST, EST and SL1 evidence for JC8.11 makes it look like a complete gene that should not be merged. | Protein_id_evidence | BP:CBP14259 | ||
| RP:cr01.sctg33.wum.87.1 | |||||
| Curator_confirmed | WBPerson4025 | ||||
| [030722 dl] Predicted by Avril Coghlan's comparative analysis of elegans and briggsae. This prediction is supported by briggsae similarity | Curator_confirmed | WBPerson1846 | |||
| [120712 gw3] Merged C48D1.5 and JC8.11 based on the RNASeq intron splice data. | Curator_confirmed | WBPerson4025 | |||
| From_analysis | RNASeq_Hillier_elegans | ||||
| [140428 gw3] Converted this from a Pseudogene to a CDS. | Curator_confirmed | WBPerson4025 | |||
| Properties | Transcript | ncRNA | |||
| Isoform | Curator_confirmed | WBPerson4025 | |||
| Method | non_coding_transcript |
