WormBase Tree Display for Transcript: C30E1.9c
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| C30E1.9c | SMap | S_parent | Sequence | CHROMOSOME_X | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 14770 | ||
| DB_info | DB_remark | probable non-coding RNA | |||
| Database | RNAcentral | URSid | URS0000E60AC0 | ||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Visible | Gene | WBGene00022951 | |||
| Variation (160) | |||||
| Corresponding_oligo_set (16) | |||||
| RNAi_result | WBRNAi00002421 | ||||
| WBRNAi00000650 | |||||
| Microarray_results (16) | |||||
| Brief_identification | probable non-coding RNA | ||||
| Last_reviewed | 13 Sep 2018 12:27:28 | WBPerson1983 | |||
| Remark | [180913 pad] This structure has been created based on the ModEncode publication. One particularly intriguing region lies on chromosome X, extending for almost 14 kb from the start of a gene, C30E1.9, annotated in WormBase as a probable noncoding RNA gene. The region includes roughly 50 copies of a degenerate tandem repeat of unit length 151. There are no large open reading frames, and the region is poorly conserved with other nematodes. The putative transcript was found to be abundantly expressed at all stages. Northern blots confirmed the presence of both the small transcript annotated in WormBase as well as a transcript larger than 10 kb, corresponding to the region covered in the RNA-seq data sets (Supplemental Fig. S4). Experiments by one of us (V. Reinke, unpubl.) show that the transcript is nuclear localized and confined to two spots in hermaphrodites and one spot in males. No phenotype for this locus was detected with RNAi knockdown. | Paper_evidence | WBPaper00032529 | ||
| Curator_confirmed | WBPerson1983 | ||||
| Properties | Transcript | ncRNA | |||
| Isoform | Curator_confirmed | WBPerson1983 | |||
| Method | ncRNA |
