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WormBase Tree Display for Transcript: C30E1.9c

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Name Class

C30E1.9cSMapS_parentSequenceCHROMOSOME_X
StructureSource_exons114770
DB_infoDB_remarkprobable non-coding RNA
DatabaseRNAcentralURSidURS0000E60AC0
OriginFrom_laboratoryHX
SpeciesCaenorhabditis elegans
VisibleGeneWBGene00022951
VariationWBVar02122063
WBVar01831168
WBVar02122064
WBVar02122065
WBVar01498960
WBVar02051135
WBVar01225490
WBVar01500067
WBVar01691502
WBVar01225491
WBVar01225492
WBVar01691503
WBVar01691504
WBVar01225493
WBVar01225494
WBVar01225495
WBVar01499519
WBVar01225496
WBVar01225497
WBVar01488481
WBVar01225498
WBVar01225499
WBVar01225500
WBVar00237998
WBVar01225501
WBVar01499710
WBVar01225502
WBVar01225503
WBVar01225504
WBVar01225505
WBVar01225506
WBVar02124662
WBVar01225507
WBVar01914381
WBVar01225508
WBVar01225509
WBVar01929566
WBVar01225510
WBVar01929567
WBVar01929568
WBVar01225511
WBVar01929569
WBVar01225512
WBVar01225513
WBVar01554625
WBVar01225514
WBVar01704447
WBVar01554626
WBVar02124302
WBVar01225515
WBVar01225516
WBVar01554627
WBVar01225517
WBVar01554628
WBVar01554629
WBVar01225518
WBVar01340347
WBVar01554630
WBVar01225519
WBVar01554631
WBVar01225520
WBVar01554632
WBVar01225521
WBVar01554633
WBVar01225522
WBVar01225523
WBVar01554634
WBVar01225524
WBVar01554635
WBVar01225525
WBVar01225526
WBVar01225527
WBVar01225528
WBVar01225529
WBVar01225530
WBVar01225531
WBVar00223627
WBVar01225532
WBVar00223628
WBVar01225533
WBVar01225534
WBVar00087591
WBVar01225535
WBVar00087592
WBVar01225536
WBVar01225537
WBVar01225538
WBVar01225539
WBVar01225540
WBVar02123959
WBVar02156325
WBVar01761235
WBVar01225541
WBVar01225542
WBVar01761236
WBVar01225543
WBVar01225544
WBVar01225545
WBVar01225546
WBVar01225547
WBVar01225548
WBVar01225549
WBVar01225550
WBVar01225551
WBVar01225552
WBVar01225553
WBVar01225554
WBVar01225555
WBVar01225556
WBVar01225557
WBVar01225558
WBVar01225559
WBVar01832167
WBVar02123617
WBVar02140968
WBVar01417369
WBVar00530146
WBVar00530147
WBVar01545457
WBVar00530148
WBVar00530149
WBVar00530150
WBVar00530151
WBVar00530152
WBVar02121075
WBVar00530153
WBVar00530154
WBVar00530155
WBVar00530156
WBVar00530157
WBVar00530158
WBVar01942721
WBVar01942722
WBVar01902094
WBVar02122746
WBVar00261614
WBVar01529197
WBVar01529198
WBVar01529199
WBVar01529200
WBVar01529201
WBVar01529202
WBVar01529203
WBVar01529204
WBVar01529205
WBVar00103841
WBVar01602699
WBVar01822789
WBVar01900274
WBVar01900275
WBVar00258697
WBVar01573403
WBVar01573404
WBVar01680217
WBVar01680218
WBVar02071505
WBVar02027960
WBVar02027961
WBVar02027962
WBVar02027963
Corresponding_oligo_set (16)
RNAi_resultWBRNAi00002421
WBRNAi00000650
Microarray_results (16)
Brief_identificationprobable non-coding RNA
Last_reviewed13 Sep 2018 12:27:28WBPerson1983
Remark[180913 pad] This structure has been created based on the ModEncode publication. One particularly intriguing region lies on chromosome X, extending for almost 14 kb from the start of a gene, C30E1.9, annotated in WormBase as a probable noncoding RNA gene. The region includes roughly 50 copies of a degenerate tandem repeat of unit length 151. There are no large open reading frames, and the region is poorly conserved with other nematodes. The putative transcript was found to be abundantly expressed at all stages. Northern blots confirmed the presence of both the small transcript annotated in WormBase as well as a transcript larger than 10 kb, corresponding to the region covered in the RNA-seq data sets (Supplemental Fig. S4). Experiments by one of us (V. Reinke, unpubl.) show that the transcript is nuclear localized and confined to two spots in hermaphrodites and one spot in males. No phenotype for this locus was detected with RNAi knockdown.Paper_evidenceWBPaper00032529
Curator_confirmedWBPerson1983
PropertiesTranscriptncRNA
IsoformCurator_confirmedWBPerson1983
MethodncRNA