WormBase Tree Display for Transcript: C47D12.8.2
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| C47D12.8.2 | SMap | S_parent | Sequence | CHROMOSOME_II | |
|---|---|---|---|---|---|
| Structure | Source_exons (12) | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Visible | Gene | WBGene00008140 | |||
| Variation (190) | |||||
| Matching_cDNA | FN896480 | Inferred_automatically | transcript_builder.pl | ||
| YA_Nanopore_Li_156188 | Inferred_automatically | transcript_builder.pl | |||
| L2_Nanopore_Roach_98569 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_252632 | Inferred_automatically | transcript_builder.pl | |||
| L2_Nanopore_Roach_78146 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_272468 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_333763 | Inferred_automatically | transcript_builder.pl | |||
| OSTR003C4_1 | Inferred_automatically | transcript_builder.pl | |||
| yk510d10.3 | Inferred_automatically | transcript_builder.pl | |||
| OSTF031D4_1 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_83121 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_237458 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_125085 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_871 | Inferred_automatically | transcript_builder.pl | |||
| yk387b6.3 | Inferred_automatically | transcript_builder.pl | |||
| yk490a8.3 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_45481 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_38564 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Roach_99488 | Inferred_automatically | transcript_builder.pl | |||
| EC022265 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_185710 | Inferred_automatically | transcript_builder.pl | |||
| yk447a3.5 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_151595 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_239188 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_249852 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_2246 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_32374 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_215578 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_244537 | Inferred_automatically | transcript_builder.pl | |||
| L4_Nanopore_Roach_64814 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_46908 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_143400 | Inferred_automatically | transcript_builder.pl | |||
| OSTR031D4_1 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_126981 | Inferred_automatically | transcript_builder.pl | |||
| yk510d10.5 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_35855 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_46241 | Inferred_automatically | transcript_builder.pl | |||
| yk131g2.3 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_262436 | Inferred_automatically | transcript_builder.pl | |||
| FN873127 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Roach_55179 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_167484 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_44569 | Inferred_automatically | transcript_builder.pl | |||
| yk451d10.3 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_41798 | Inferred_automatically | transcript_builder.pl | |||
| OSTF003C4_1 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_232246 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_102557 | Inferred_automatically | transcript_builder.pl | |||
| yk131g2.5 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_129937 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_14243 | Inferred_automatically | transcript_builder.pl | |||
| EC025666 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_102925 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_40459 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_89119 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_260405 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_109038 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_125866 | Inferred_automatically | transcript_builder.pl | |||
| yk86a4.3 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_86215 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_36977 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_260779 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_143038 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_87745 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_70282 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_173385 | Inferred_automatically | transcript_builder.pl | |||
| yk226d2.3 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_152883 | Inferred_automatically | transcript_builder.pl | |||
| yk226d2.5 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_38319 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_55293 | Inferred_automatically | transcript_builder.pl | |||
| elegans_PE_SS_GG7519|c13_g1_i2 | Inferred_automatically | transcript_builder.pl | |||
| yk1722a10.5 | Inferred_automatically | transcript_builder.pl | |||
| Corresponding_CDS | C47D12.8 | ||||
| Corresponding_PCR_product | cenix:200-h3 | ||||
| mv_C47D12.8 | |||||
| mv_VF13D12L.2 | |||||
| sjj_C47D12.8 | |||||
| sjj_VF13D12L.2 | |||||
| Corresponding_oligo_set (19) | |||||
| RNAi_result | WBRNAi00062836 | ||||
| WBRNAi00042669 | |||||
| WBRNAi00062837 | |||||
| WBRNAi00036116 | |||||
| WBRNAi00012071 | |||||
| WBRNAi00106933 | |||||
| WBRNAi00061508 | |||||
| WBRNAi00111633 | |||||
| Microarray_results (21) | |||||
| SAGE_tag | SAGE:tatactggcttcaatac | Strand | Sense | ||
| Unambiguously_mapped | |||||
| SAGE:cgagaattca | Strand | Sense | |||
| Unambiguously_mapped | |||||
| SAGE:cggaagagctcagcgga | Strand | Sense | |||
| Unambiguously_mapped | |||||
| SAGE:acgagagctattttgtc | Strand | Sense | |||
| Unambiguously_mapped | |||||
| SAGE:cgagaattcaacagcga | Strand | Sense | |||
| Unambiguously_mapped | |||||
| SAGE:aatcatttct | Strand | Antisense | |||
| SAGE:acgagagcta | Strand | Sense | |||
| Unambiguously_mapped | |||||
| SAGE:atcgacgtggtcatatt | Strand | Sense | |||
| Unambiguously_mapped | |||||
| SAGE:aagggatctgttgggat | Strand | Antisense | |||
| SAGE:tatactggct | Strand | Sense | |||
| Unambiguously_mapped | |||||
| RNASeq_FPKM (74) | |||||
| Associated_feature | WBsf608958 | ||||
| WBsf014648 | |||||
| Method | Coding_transcript |
