WormBase Tree Display for Sequence: Y48A6B
expand all nodes | collapse all nodes | view schema
| Y48A6B | DNA | Y48A6B | 75073 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (15) | ||||
| CDS_child (414) | ||||||
| Transcript (45) | ||||||
| Nongenomic | yk299g3 | 20097 | 20451 | |||
| PCR_product (58) | ||||||
| Allele (1308) | ||||||
| Oligo_set (11) | ||||||
| Feature_object (603) | ||||||
| Feature_data | Y48A6B:Polysome | 1 | 75073 | |||
| Y48A6B:TranscriptionallyActiveRegion | 1 | 75073 | ||||
| Y48A6B:ChIPSeqTF | 1 | 75073 | ||||
| Y48A6B:TRF | 1 | 75073 | ||||
| Y48A6B:Dust | 1 | 75073 | ||||
| Y48A6B:inverted | 1 | 75073 | ||||
| Homol_data (21) | ||||||
| Structure | From | Source | CHROMOSOME_III | |||
| Overlap_right | W09D6 | 74973 | ||||
| Overlap_left | W05B2 | |||||
| Clone_left_end | W09D6 | 74973 | ||||
| Y48A6B | 1 | |||||
| Clone_right_end | Y48A6B | 75073 | ||||
| DB_info | Database | EMBL | NDB_AC | AL023844 | ||
| NDB_SV | AL023844.2 | |||||
| Secondary_accession | Z92854 | |||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 26857 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Gardner AE | ||||
| From_laboratory | HX | |||||
| Date_directory | 980130 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | Y48A6B | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 0c33ef781754d76a22b5681388cbb69c | ||||
| Status | Finished | 30 Jan 1998 00:00:00 | ||||
| Submitted | 09 Jun 1998 00:00:00 | |||||
| Annotated | 01 Jan 1980 00:00:00 | |||||
| Map | Sequence-III | Ends | Left | 5703 | ||
| Right | 5728 | |||||
| Interpolated_map_position | III | 5.86045 | ||||
| Assembly_tags | Finished Left | 1 | 4 | Y48A6B | ||
| annotation | 14529 | 14540 | tandem repeat between 57320 - 59030 so covering 1.7kb . 70 copies of CAATCTATTTTTTGGTATG 80 copies of TTTTTTGGTATG 76 copies of CAATCTATTTTTT assembled correct as possible according to read pairs, not yet confirmed by digest. | |||
| 62047 | 62052 | clone so42c6 has been sized and is as predicted so inverted repeat asembled correctly. | ||||
| Finished Right | 75070 | 75073 | Y48A6B | |||
| Clone left end | 74973 | 74976 | W09D6 | |||
| Method | Genomic_canonical |
