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WormBase Tree Display for Sequence: Y116A8C

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Name Class

Y116A8CDNAY116A8C260344
SMapS_child (13)
StructureFromSourceCHROMOSOME_IV
Overlap_rightC52D10260241
Overlap_leftC26C9
Clone_left_endC52D10260241
Y116A8C1
Clone_right_endC26C9101
Y113B824807
Y116A8C260344
DB_infoDatabaseEMBLNDB_ACAL117204
NDB_SVAL117204.2
Secondary_accessionZ98858
DB_remark[121025] Sequence correction: SNP 0 bases @ 39301
[121025] Sequence correction: SNP 0 bases @ 186601
[121025] Sequence correction WBsf267952 : Insertion C1 bases from @ 35036
[121025] Sequence correction WBsf268108 : Insertion C1 bases from @ 61429
[121025] Sequence correction WBsf268177 : Insertion G1 bases from @ 202507
KeywordHTG
EMBL_dump_infoEMBL_dump_methodworm_EMBL-dump
OriginFrom_authorMcMurray AA
From_laboratoryHX
Date_directory990118
SpeciesCaenorhabditis elegans
StrainWBStrain00000001
VisibleCloneY116A8C
PropertiesGenomic_canonical
ChecksumMD588e77845cdfb1b0a652816a4cbee5621
StatusShotgun10 Jul 1997 00:00:00
Finished18 Jan 1999 00:00:00
Submitted18 Jan 1999 00:00:00
Annotated26 Jul 1999 00:00:00
MapSequence-IVEndsLeft8140
Right8160
Interpolated_map_positionIV16.0203
Assembly_tagsClone right end98101C26C9
2480224807Y113B8
Finished Left14Y116A8C
annotation4564345798
First select a Feature -
[ ] Unsure
[x] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[x] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
4579845917
First select a Feature -
[ ] Unsure
[x] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[x] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
102228102254
First select a Feature -
[ ] Unsure
[x] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[x] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
single clone region
196884197040
First select a Feature -
[ ] Unsure
[x] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[x] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
single sonicated clone
236298236318
First select a Feature -
[ ] Unsure
[x] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[ ] Single clone region
[ ] Forced join
[x] Other
Add a comment here -
screened small insert library from PCR
product
4964849694First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -single clone region between 2 runs ofC's. Only this clone was sequenceablewith Big Dye Primers
159726162913First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -typical repeat element TTGTTTTCTTTTATCAAACTTTTTAAAATTTTAAAGAAAACGCAAATCAACCTATTCAGTTGACAAT (67-mer). Length of repeat isnot determined.
167511234866First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here -Inverted repeat region. There are no clones spanning the inverted repeat elements to confirm their orientation, so orientation of the loop was determined by PCR across each repeat element in both possible orientations.Only one PCR of the 4 possiblecombinations gave a product whichcorresponds to the loop orientationsubmitted.
248415248738First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -tandem repeat of typical repeat elementCCCGCCAAAATGTTTTCGAAAAATTAAATTTTGAATTCACGCCAAAATGATTTCTAAGAAAATTCAAATTTGAATT(76-mer). length not determined.
Finished Right260341260344Y116A8C
Clone left end260241260244C52D10
MethodGenomic_canonical