WormBase Tree Display for Sequence: VM02G9R
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| VM02G9R | DNA | VM02G9R | 2928 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | CDS_child | RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g48_x21_II_p | 1213 | 1736 | |
| RNASEQ_early_embryo_g25n11s5k53_x21_II_m | 2002 | 1880 | ||||
| RNASEQ_Adult_Harposporium_exposed_2_24hrs_g72_x21_II_p | 1213 | 1736 | ||||
| RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g44n11s5k81_x21_II_m | 2002 | 1880 | ||||
| RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g68_x21_II_p | 1213 | 1736 | ||||
| RNASEQ_Young_Adult_25dC_46hrs_post-L1_g17n11s5k52_x21_II_m | 2002 | 1880 | ||||
| VM02G9R.gc1 | 2138 | 152 | ||||
| PCR_product | cenix:145-g10 | 78 | 1243 | |||
| Allele (60) | ||||||
| Feature_object | WBsf989318 | 926 | 978 | |||
| WBsf368727 | 1842 | 2052 | ||||
| WBsf898642 | 114 | 114 | ||||
| Feature_data | VM02G9R:Polysome | 1 | 2928 | |||
| VM02G9R:TranscriptionallyActiveRegion | 1 | 2928 | ||||
| VM02G9R:TRF | 1 | 2928 | ||||
| VM02G9R:Dust | 1 | 2928 | ||||
| VM02G9R:inverted | 1 | 2928 | ||||
| Homol_data (16) | ||||||
| Structure | From | Source | CHROMOSOME_II | |||
| Overlap_right | C07E3 | 2825 | ||||
| Overlap_left | M02G9 | |||||
| Clone_left_end | C07E3 | 2825 | ||||
| Clone_right_end | M02G9 | 104 | ||||
| DB_info | Database | EMBL | NDB_AC | Z99268 | ||
| NDB_SV | Z99268.2 | |||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 114 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Barlow K | ||||
| From_laboratory | HX | |||||
| Date_directory | 970417 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | VM02G9R | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 4706b692533b546b0bd49ae9cb2140cc | ||||
| Status | Finished | 17 Apr 1997 00:00:00 | ||||
| Submitted | 17 Sep 1997 00:00:00 | |||||
| Annotated | 20 Oct 1997 00:00:00 | |||||
| Map | Sequence-II | Ends | Left | 6095 | ||
| Right | 6119 | |||||
| Interpolated_map_position | II | 2.42243 | ||||
| Assembly_tags | Finished Left | 1 | 4 | |||
| Clone right end | 101 | 104 | M02G9 clone right end | |||
| Clone left end | 2825 | 2828 | C07E3 clone left end | |||
| Finished Right | 2925 | 2928 | ||||
| annotation | 1111 | 1111 | This base has been edited to a G as the spacing on the two pcr walks suggests that the true alignment at this position is a G and not the A. This reading also agrees with the subclone. | |||
| 1123 | 1123 | True alignments of the reads at this position suggests that this is TA which agrees with the sequnce of the subclone | ||||
| Method | Genomic_canonical |
