WormBase Tree Display for Sequence: F33C8
expand all nodes | collapse all nodes | view schema
F33C8 | DNA | F33C8 | 25306 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child | WBGene00006432 | 4975 | 12183 | |
WBGene00202150 | 1490 | 1429 | ||||
WBGene00196403 | 4818 | 4677 | ||||
WBGene00305383 | 6041 | 6256 | ||||
WBGene00202049 | 1060 | 1133 | ||||
WBGene00199335 | 1133 | 1060 | ||||
WBGene00006634 | 22899 | 20022 | ||||
WBGene00009357 | 14794 | 20036 | ||||
WBGene00219931 | 11409 | 11540 | ||||
WBGene00195524 | 11397 | 11114 | ||||
CDS_child (73) | ||||||
Transcript | F33C8.5 | 11397 | 11114 | |||
F33C8.6 | 4818 | 4677 | ||||
F33C8.7 | 1133 | 1060 | ||||
F33C8.8 | 1060 | 1133 | ||||
F33C8.9 | 1490 | 1429 | ||||
F33C8.10 | 11409 | 11540 | ||||
F33C8.11 | 6041 | 6256 | ||||
F33C8.1.1 | 4975 | 12183 | ||||
F33C8.2.1 | 14794 | 20036 | ||||
F33C8.3.1 | 22899 | 20022 | ||||
Nongenomic | yk207b12 | 20086 | 21358 | |||
yk328g3 | 9543 | 12109 | ||||
PCR_product (15) | ||||||
Allele (473) | ||||||
Oligo_set | Aff_F33C8.1 | 10353 | 11774 | |||
Aff_F33C8.2 | 16480 | 18316 | ||||
Aff_F33C8.3 | 21634 | 20077 | ||||
Feature_object (194) | ||||||
Feature_data | F33C8:Polysome | 1 | 25306 | |||
F33C8:TranscriptionallyActiveRegion | 1 | 25306 | ||||
F33C8:ChIPSeqTF | 1 | 25306 | ||||
F33C8:TRF | 1 | 25306 | ||||
F33C8:Dust | 1 | 25306 | ||||
F33C8:inverted | 1 | 25306 | ||||
Homol_data (19) | ||||||
Structure | From | Source | CHROMOSOME_X | |||
Overlap_right | C05G5 | 25207 | ||||
Overlap_left | F40E10 | |||||
Clone_left_end | F33C8 | 1 | ||||
D2085 | 25207 | |||||
Clone_right_end | F40E10 | 8945 | ||||
DB_info | Database | EMBL | NDB_AC | Z69790 | ||
NDB_SV | Z69790.2 | |||||
DB_remark | [071129] Sequence correction: insertion 1 bases catgctaagccaattctcatcggccggagGtccaacacctctatccatcgaaccgtgtag @ 11683 | |||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | Percy CM | ||||
From_laboratory | HX | |||||
Date_directory | 071129 | |||||
Species | Caenorhabditis elegans | |||||
Strain | WBStrain00000001 | |||||
Visible | Clone | F33C8 | ||||
Reference | WBPaper00015364 | |||||
WBPaper00022656 | ||||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | 5a88386ce984f94e32236f6f88ab005d | ||||
Status | Finished | 18 Oct 1995 00:00:00 | ||||
Submitted | 28 Feb 1996 00:00:00 | |||||
Annotated | 27 Feb 1996 00:00:00 | |||||
Map | Sequence-X | Ends | Left | 7957 | ||
Right | 7983 | |||||
Interpolated_map_position | X | 20.291 | ||||
Assembly_tags | annotation | 11338 | 11344 | part of second half of hairpin loop. There are a number of reads (mostly terms) in both directions over these 7 bases, but the data is not totally clear, so has been edited to the clearest reads. | ||
1060 | 1133 | run of T's and A's exact number varies pcr product F33C8.0912 shows slippage in the number of copies. This ranges from to 13 to 35 copies | ||||
7867 | 7871 | single stranded with term | ||||
8655 | 8834 | singlr stranded with terninator | ||||
8835 | 8864 | single stranded with terminator | ||||
8917 | 9025 | single stranded across hairpin with terminator | ||||
9100 | 9138 | single stranded across hairpin with terminator | ||||
9243 | 9274 | single stranded with terminator | ||||
9651 | 9712 | single stranded with terminator | ||||
10472 | 10532 | single stranded | ||||
10533 | 10621 | single stranded with term | ||||
10621 | 10977 | single stranded | ||||
10978 | 10986 | single stranded only 9 bases not covered by terninator | ||||
11226 | 11250 | single stranded with only one template across part of a hairpin | ||||
10987 | 11040 | single stranded with terminator | ||||
11251 | 11288 | single stranded with terminator | ||||
11521 | 11631 | single stranded with term | ||||
11632 | 11721 | single stranded with terminator | ||||
11723 | 11754 | single stranded with terminator | ||||
12612 | 12724 | single stranded with treminator | ||||
Clone left end | 1 | 4 | left hand end of F33C8 | |||
25207 | 25210 | left end C05G5 | ||||
Finished Left | 1 | 1 | ||||
Clone right end | 8942 | 8945 | end of F40E10 | |||
Finished Right | 25306 | 25306 | ||||
Method | Genomic_canonical |