WormBase Tree Display for Sequence: T27B1

T27B1 DNA: T27B1 27763
  SMap: S_child: Gene_child: WBGene00003933 13405 16728
        WBGene00197067 510 432
        WBGene00023153 438 510
        WBGene00199562 9564 9305
        WBGene00202112 10725 10872
        WBGene00003883 17189 27726
        WBGene00202447 6631 6780
        WBGene00199396 9245 9071
        WBGene00198563 7470 7336
        WBGene00201420 6705 6561
      CDS_child: T27B1.1 17934 27661
        T27B1.1:wp88 17934 27661
        T27B1.1:wp151 17934 27661
        T27B1.1:wp184 17934 27661
        T27B1.2:wp142 12750 16061
        T27B1.2a 13405 16061
        T27B1.2b 13405 16061
        T27B1.2c 14207 16061
        T27B1.2d 14207 16061
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g65_x34_X_p 14610 15234
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g49_x34_X_p 21630 21893
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g63_x34_X_p 21630 21947
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g55_x34_X_p 23433 23486
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g10n11_x34_X_p 13405 16058
        RNASEQ_embryo_him-8_20dC_post-L1_g18n11_x34_X_p 13405 16058
        RNASEQ_embryo_him-8_20dC_post-L1_g75_x34_X_p 19482 19581
        RNASEQ_embryo_him-8_20dC_post-L1_g50_x34_X_p 23948 24949
        RNASEQ_embryo_him-8_20dC_post-L1_g61_x34_X_p 23263 23331
        RNASEQ_embryo_him-8_20dC_post-L1_g69_x34_X_p 21858 22073
        RNASEQ_embryo_him-8_20dC_post-L1_g60_x34_X_p 21391 21453
        RNASEQ_embryo_him-8_20dC_post-L1_g4n11_x34_X_p 14511 14639
        RNASEQ_embryo_him-8_20dC_post-L1_g108_x34_X_p 20309 20587
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g54_x34_X_p 23592 23684
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g74n11_x34_X_p 14511 14639
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g87_x34_X_p 18778 19596
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g91_x34_X_p 22709 23043
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g55_x34_X_p 22650 22700
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g38n11_x34_X_p 13405 16058
        RNASEQ_L4_soma_JK1107_no_DNaseI_g84_x34_X_p 24284 24659
        RNASEQ_early_embryo_g4n11_x34_X_p 14517 14639
        RNASEQ_early_embryo_g46_x34_X_p 21307 27658
        RNASEQ_early_embryo_g13n11_x34_X_p 13405 16058
        RNASEQ_early_embryo_g51_x34_X_p 17934 20755
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g41_x34_X_p 17934 27658
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g12n11_x34_X_p 13405 16058
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g5n11_x34_X_p 14517 14639
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g31_x34_X_p 14207 16058
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g38_x34_X_p 14511 14639
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g50_x34_X_p 18555 27658
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g78_x34_X_p 20585 21210
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g96_x34_X_p 20187 20353
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g95_x34_X_p 22038 22885
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g79_x34_X_p 18328 18468
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g12n11_x34_X_p 13405 16058
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g83_x34_X_p 21388 21545
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g119_x34_X_p 19482 19575
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g61_x34_X_p 23433 25015
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g24n11_x34_X_p 14517 14639
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g101_x34_X_p 18636 19466
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g90_x34_X_p 19793 20111
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g103_x34_X_p 18636 18762
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g98_x34_X_p 18764 19443
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g73_x34_X_p 24226 24679
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g100_x34_X_p 19482 19605
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g84_x34_X_p 20669 21219
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g36n11_x34_X_p 14511 14639
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g95_x34_X_p 19404 19563
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g51_x34_X_p 19760 20108
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g48_x34_X_p 14854 16058
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g75_x34_X_p 21630 21848
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g83_x34_X_p 24226 24787
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g42_x34_X_p 15223 15983
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g64_x34_X_p 14610 15198
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g99_x34_X_p 20155 20258
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g104_x34_X_p 23147 23245
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g93_x34_X_p 13423 14269
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g95_x34_X_p 19433 19565
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g75_x34_X_p 21702 21815
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g51_x34_X_p 14291 14455
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g92_x34_X_p 22826 22992
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g78_x34_X_p 21388 21611
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g99_x34_X_p 20711 21267
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g62_x34_X_p 22814 22891
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g87_x34_X_p 23679 23929
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g70_x34_X_p 24226 24643
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g35_x34_X_p 14207 16010
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g102_x34_X_p 20187 20509
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g60_x34_X_p 24650 24871
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g100_x34_X_p 18555 18635
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g81_x34_X_p 19577 19676
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g105_x34_X_p 23948 24156
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g96_x34_X_p 19419 19551
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g73_x34_X_p 23433 23573
        T27B1.gc1 14207 16061
        T27B1.gc2 17854 27661
        ContigX.elegans.jigsaw.2617.mRNA2617 13309 16724
        ContigX.elegans.jigsaw.2618.mRNA2618 17218 27728
        AG1201_T27B1.2.T2 13405 16061
        AG1201_T27B1.2.T3 13405 16061
        AG1201_T27B1.2.T1 14207 16061
        AG1201_T27B1.1.T3 17934 27319
        AG1201_T27B1.1.T4 17934 27319
        AG1201_T27B1.1.T1 17934 27661
      Transcript (13)
      Nongenomic: yk385g7 23880 27652
      PCR_product: cenix:101-f8 22768 23666
        cenix:105-b11 15070 15868
        mv_T27B1.1 17935 27659
        mv_T27B1.2 12751 16059
        sjj_T27B1.1 20941 22114
        sjj_T27B1.2 14303 15481
      Allele (344)
      Oligo_set: Aff_K08B5.2 28949 27746
        Aff_T27B1.1 25901 27661
        Aff_T27B1.2 15187 16061
      Feature_object (129)
      Feature_data: T27B1:Polysome 1 27763
        T27B1:TranscriptionallyActiveRegion 1 27763
        T27B1:ChIPSeqTF 1 27763
        T27B1:TRF 1 27763
        T27B1:Dust 1 27763
        T27B1:inverted 1 27763
      Homol_data (18)
  Structure: From: Source: CHROMOSOME_X
    Overlap_right: K08B5 24764
    Overlap_left: T25D1
    Clone_left_end: K08B5 24764
      T27B1 1
    Clone_right_end: T25D1 15044
  DB_info: Database: EMBL NDB_AC FO081607
        NDB_ID _U41020
        NDB_SV FO081607.1
    Secondary_accession: U41020
    DB_remark: The 5' clone is T25D1, 200 bp overlap; the 3' clone is K08B5, 3000 bp overlap. Actual start of this clone is at base position 1 of T27B1; actual end is at 11440 of K08B5.
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Leimbac D
      Wu X
      Leimbach D
      Wilson RK
    From_laboratory: RW
    Date: 19 Oct 1995 00:00:00
    Species: Caenorhabditis elegans
  Visible: Clone: T27B1
  Properties: Genomic_canonical
    Checksum: MD5: 8e3ecb584fdbeb86179e21d550cdc593
    Status: Shotgun
      Finished
      Submitted: 19 Oct 1995 00:00:00
  Map: Sequence-X
  Interpolated_map_position: X 24.0229
  Method: Genomic_canonical