WormBase Tree Display for Sequence: F38G1

F38G1 DNA: F38G1 24444
  SMap: S_child: Gene_child: WBGene00023034 19587 19658
        WBGene00044556 8333 10087
        WBGene00023035 21711 21640
        WBGene00202078 19666 19587
        WBGene00001185 21457 24090
        WBGene00199679 20216 20067
        WBGene00000484 13222 18276
      CDS_child: F38G1.1 13223 18205
        F38G1.2 21566 23934
        F38G1.3 8333 9783
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g27_x1_X_p 8995 9699
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g75_x1_X_p 16582 16632
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g49_x1_X_p 14562 14817
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g23n11_x1_X_p 8354 9741
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g54_x1_X_p 17604 17933
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g51_x1_X_p 14842 15086
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g41_x1_X_p 14562 14847
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g47_x1_X_p 17027 17609
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g46_x1_X_p 13268 13384
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g31_x1_X_p 21566 22660
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g56_x1_X_p 16326 16683
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g38_x1_X_p 14857 15059
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g23_x1_X_p 8995 9729
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g39_x1_X_p 22622 23215
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g8_x1_X_p 8995 9708
        RNASEQ_embryo_him-8_20dC_post-L1_g43_x1_X_p 14562 14630
        RNASEQ_embryo_him-8_20dC_post-L1_g30_x1_X_p 8930 9700
        RNASEQ_embryo_him-8_20dC_post-L1_g47_x1_X_p 18018 18202
        RNASEQ_embryo_him-8_20dC_post-L1_g33_x1_X_p 17027 17837
        RNASEQ_embryo_him-8_20dC_post-L1_g49_x1_X_p 16407 16529
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g16n11_x1_X_p 8354 9780
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g43_x1_X_p 10746 11634
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g71_x1_X_p 16461 16605
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g63_x1_X_p 22625 22675
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g72_x1_X_p 15379 15471
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g35_x1_X_p 22422 22597
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g70_x1_X_p 21473 21572
        RNASEQ_L4_soma_JK1107_no_DNaseI_g64_x1_X_p 22461 22654
        RNASEQ_L4_soma_JK1107_no_DNaseI_g40_x1_X_p 23207 23760
        RNASEQ_L4_soma_JK1107_no_DNaseI_g22n11_x1_X_p 21566 22454
        RNASEQ_L4_soma_JK1107_no_DNaseI_g19_x1_X_p 8995 9753
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g84_x1_X_p 18140 18202
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g58_x1_X_p 17027 17654
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g74_x1_X_p 16675 16767
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g26_x1_X_p 21473 21575
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g44_x1_X_p 14562 15399
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g38_x1_X_p 21590 22639
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g65_x1_X_p 22643 23685
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g81_x1_X_p 15481 15587
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g8n11_x1_X_p 8354 9780
        RNASEQ_early_embryo_g24_x1_X_p 13223 18026
        RNASEQ_early_embryo_g27_x1_X_p 8995 9780
        RNASEQ_early_embryo_g36_x1_X_p 23195 23287
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g24_x1_X_p 8354 9780
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g34_x1_X_p 22410 23287
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g22n11_x1_X_p 13223 18202
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g16n11_x1_X_p 8354 9780
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g25_x1_X_p 13379 18202
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g54_x1_X_p 22410 22469
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g80_x1_X_p 22410 22457
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g40_x1_X_p 14842 15438
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g56_x1_X_p 15775 15822
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g46_x1_X_p 16440 16647
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g29_x1_X_p 8995 9780
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g30_x1_X_p 8354 9780
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g77_x1_X_p 23204 23859
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g92_x1_X_p 21617 22388
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g55_x1_X_p 22410 22591
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g75_x1_X_p 21590 22442
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g23n11_x1_X_p 8354 8729
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g47_x1_X_p 8995 9741
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g45_x1_X_p 22470 23700
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g16n11_x1_X_p 8354 9780
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g15n11_x1_X_p 8354 9765
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g73_x1_X_p 22634 23212
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g18_x1_X_p 8995 9696
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g68_x1_X_p 15412 15530
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g47_x1_X_p 21473 21587
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g13n11_x1_X_p 8354 9732
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g54_x1_X_p 8995 9780
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g45_x1_X_p 8456 8910
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g72_x1_X_p 21590 22436
        F38G1.gc1 8354 9783
        F38G1.gc2 10746 18205
        ContigX.elegans.jigsaw.81.mRNA81 8069 10082
        ContigX.elegans.jigsaw.83.mRNA83 13059 19010
        ContigX.elegans.jigsaw.84.mRNA84 21548 24046
        ContigX.elegans.jigsaw.82.mRNA82 10732 12645
        AG1201_F38G1.3.T1 8333 9783
        AG1201_RIT6P.1704.T1 10915 10998
        AG1201_RIT6P.1084.T1 11584 11835
        AG1201_F38G1.1.T3 13223 15828
        AG1201_F38G1.1.T4 13223 16938
        AG1201_F38G1.1.T2 13223 18205
        AG1201_F38G1.1.T1 17604 18205
        AG1201_F38G1.2.T1 21566 23934
      Transcript: F38G1.4 20216 20067
        F38G1.5 19666 19587
        F38G1.t1 19587 19658
        F38G1.t2 21711 21640
        F38G1.1.1 13222 18276
        F38G1.2.1 21457 24090
        F38G1.2.2 21546 24050
        F38G1.3.1 8333 10087
      PCR_product: cenix:134-a12 22328 22724
        cenix:53-c10 16485 17132
        mv_AAD00574 21567 23932
        mv_CAB38019 13224 18203
        sjj2_F38G1.2 23188 24182
        sjj2_F38G1.3 8265 9763
        sjj_F38G1.1 14540 15616
      Allele (384)
      Oligo_set: Aff_F38G1.1 16931 18173
      Feature_object (111)
      Feature_data: F38G1:Polysome 1 24444
        F38G1:TranscriptionallyActiveRegion 1 24444
        F38G1:ChIPSeqTF 1 24444
        F38G1:TRF 1 24444
        F38G1:Dust 1 24444
        F38G1:inverted 1 24444
      Homol_data (16)
  Structure: From: Source: CHROMOSOME_X
    Overlap_right: B0310 23745
    Overlap_left: F52D1
    Clone_left_end: F38G1 1
      B0310 23745
    Clone_right_end: F52D1 15490
  DB_info: Database: EMBL NDB_AC FO080171
        NDB_ID _AC006635
        NDB_SV FO080171.2
    Secondary_accession: AC006635
    DB_remark: The 5' clone is F52D1, 200 bp overlap; the 3' clone is B0310, 700 bp overlap. Actual start of this clone is at base position 1 of F38G1; actual end is at 12693 of B0310.
      [121025] Sequence correction: SNP 0 bases @ 17872
      [121025] Sequence correction: SNP 0 bases @ 20551
      [121025] Sequence correction: SNP 0 bases @ 20576
      [121025] Sequence correction: SNP 0 bases @ 23638
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Favello A
      Wilson RK
    From_laboratory: RW
    Date: 06 Oct 1995 00:00:00
      19 Oct 1995 00:00:00
    Species: Caenorhabditis elegans
  Visible: Clone: F38G1
  Properties: Genomic_canonical
    Checksum: MD5: d472d0eee7e03739233339b1642e8b0a
    Status: Shotgun
      Finished
      Submitted: 06 Oct 1995 00:00:00
  Map: Sequence-X
  Interpolated_map_position: X -19.7714
  Method: Genomic_canonical