WormBase Tree Display for Pseudogene: T04A8.3
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| T04A8.3 | Evidence | Inferred_automatically | make_isoforms.pl | ||
|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T04A8 | ||
| Structure | Source_exons | 1 | 135 | ||
| 982 | 1035 | ||||
| 1089 | 1347 | ||||
| 1394 | 2154 | ||||
| 2357 | 2760 | ||||
| DB_info | DB_remark | coding pseudogene clec-155 | |||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Type | Coding_pseudogene | ||||
| Attributes | SubType | unprocessed_pseudogene | |||
| Visible | Gene | WBGene00011405 | |||
| Brief_identification | C-type lectin pseudogene clec-155 | Curator_confirmed | WBPerson1983 | ||
| Corresponding_PCR_product | TH:303G4 | ||||
| TH:308C2 | |||||
| TH:312F6 | |||||
| cenix:303-g4 | |||||
| cenix:308-c2 | |||||
| cenix:312-f6 | |||||
| mv_T04A8.3 | |||||
| mv_T04A8.4 | |||||
| sjj_T04A8.3 | |||||
| sjj_T04A8.4 | |||||
| Corresponding_oligo_set (16) | |||||
| Variation (44) | |||||
| Microarray_results (18) | |||||
| RNASeq_FPKM (74) | |||||
| Last_reviewed | 16 Jan 2009 00:00:00 | WBPerson1983 | |||
| Remark | Genefinder originally predicted two genes, a single gene was produced by using the weak splice sites which now make up the fourth intron | ||||
| Possesses two domains which have similarity to C-type lectin domains, however these are not predicted to be true C-type lectin domains by prosite | |||||
| [060117 pad] Gene prediction modified following modification of the upstream gene and also based on elegans and briggsae protein homology. The upstream gene was miss annotated and therefore utilised sequence that when compared to other elegans and briggsae genes really belonged to this gene. The original 1st exon utilised weak splicing and was only used as it contained a high scoring ATG. The new 1st exon utilises strong splicing and is supported by protein homology. | Curator_confirmed | WBPerson1983 | |||
| [090116 pad] Gene prediction re-classified as a pseudogene following analysis of this gene with other c-type lectins. This gene suffers a frameshift in exon 4. | Curator_confirmed | WBPerson1983 | |||
| Method | Pseudogene |
