WormBase Schema for Model: Variation
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?Variation | Evidence | #Evidence | ||||
---|---|---|---|---|---|---|
Name | Public_name | UNIQUE | ?Variation_name | XREF | Public_name_for | |
Other_name | ?Variation_name | XREF | Other_name_for | #Evidence | ||
Rearrangement | ?Rearrangement | XREF | Variation | |||
HGVSg | UNIQUE | Text | #Evidence | |||
Sequence_details (10) | ||||||
Variation_type | Engineered_allele | |||||
Allele | ||||||
SNP | ||||||
Confirmed_SNP | ||||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | Text | Text | Text | ||
Polymorphic_strain_digest | Text | Text | Text | |||
Transposon_insertion | ?Transposon_family | XREF | In_variation | |||
Natural_variant | ||||||
Origin (19) | ||||||
Linked_to | ?Variation | XREF | Linked_to | |||
Affects | Gene | ?Gene | XREF | Allele | #Molecular_change | |
Predicted_CDS | ?CDS | XREF | Variation | #Molecular_change | ||
Transcript | ?Transcript | XREF | Variation | #Molecular_change | ||
Pseudogene | ?Pseudogene | XREF | Variation | #Molecular_change | ||
Feature | ?Feature | XREF | Associated_with_variation | |||
Interactor | ?Interaction | XREF | Variation_interactor | |||
Possibly_affects | ?Gene | XREF | Possibly_affected_by | #Evidence | ||
Isolation | Date | DateType | ||||
Mutagen | UNIQUE | Text | #Evidence | |||
Forward_genetics | Text | #Evidence | ||||
Reverse_genetics | Text | #Evidence | ||||
Transposon_excision | ?Transposon_family | |||||
Derived_from_variation | ?Variation | XREF | Derivative | |||
Derivative | ?Variation | XREF | Derived_from_variation | |||
Derived_from_construct | ?Construct | XREF | Engineered_variation | |||
Genetics | Gene_class | ?Gene_class | XREF | Variation | ||
Mating_efficiency | male | UNIQUE | ME0_Mating_not_successful | #Evidence | ||
ME1_Mating_rarely_successful | #Evidence | |||||
ME2_Mating_usually_successful | #Evidence | |||||
ME3_Mating_always_successful | #Evidence | |||||
hermaphrodite | UNIQUE | HME0_Mating_not_successful | #Evidence | |||
HME1_Mating_rarely_successful | #Evidence | |||||
HME2_Mating_usually_successful | #Evidence | |||||
HME3_Mating_always_successful | #Evidence | |||||
Map | ?Map | XREF | Variation | #Map_position | ||
Interpolated_map_position | UNIQUE | ?Map | UNIQUE | Float | ||
Mapping_data | 2_point | ?2_point_data | ||||
Multi_point | ?Multi_pt_data | |||||
Pos_neg_data | ?Pos_neg_data | |||||
In_2_point | ?2_point_data | |||||
In_multi_point | ?Multi_pt_data | |||||
In_pos_neg_data | ?Pos_neg_data | |||||
Marked_rearrangement | ?Rearrangement | XREF | By_variation | |||
Description | Phenotype | ?Phenotype | XREF | Variation | #Phenotype_info | |
Phenotype_remark | ?Text | #Evidence | ||||
Phenotype_not_observed | ?Phenotype | XREF | Not_in_Variation | #Phenotype_info | ||
Disease_info | Models_disease | ?DO_term | XREF | Disease_model_variation | ||
Modifies_disease | ?DO_term | XREF | Disease_modifier_variation | |||
Models_disease_in_annotation | ?Disease_model_annotation | XREF | Variation | |||
Modifies_disease_in_annotation | ?Disease_model_annotation | XREF | Modifier_variation | |||
Modifies_disease_asserted_variation | ?Disease_model_annotation | XREF | Asserted_variation | |||
Reference | ?Paper | XREF | Allele | |||
Remark | ?Text | #Evidence | ||||
Method | UNIQUE | ?Method | ||||
Supporting_data | Movie | ?Movie | XREF | Variation | #Evidence |