WormBase Schema for Model: CDS
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?CDS | Evidence | #Evidence | ||||||
---|---|---|---|---|---|---|---|---|
SMap | S_parent | UNIQUE | Sequence | UNIQUE | ?Sequence | XREF | CDS_child | |
Transposon | UNIQUE | ?Transposon | XREF | CDS_child | ||||
Structure | Source_exons | Int | UNIQUE | Int | ||||
DB_info | Database | ?Database | ?Database_field | UNIQUE | ?Text | |||
Protein_id | ?Sequence | UNIQUE | Text | UNIQUE | Int | |||
DB_remark | ?Text | #Evidence | ||||||
Origin | From_laboratory | UNIQUE | ?Laboratory | |||||
Species | UNIQUE | ?Species | ||||||
Genetic_code | UNIQUE | ?Genetic_code | ||||||
Properties | Coding | CDS | UNIQUE | Int | UNIQUE | Int | ||
CDS_predicted_by | ?Method | Float | ||||||
Prediction_status | UNIQUE | Predicted | ||||||
Partially_confirmed | ||||||||
Confirmed | ||||||||
Isoform | #Evidence | |||||||
Artificial_intron | UNIQUE | Ribosomal_slippage | ||||||
Low_quality_sequence | ||||||||
Start_not_found | UNIQUE | Int | ||||||
End_not_found | ||||||||
Visible | Gene | UNIQUE | ?Gene | XREF | Corresponding_CDS | |||
Gene_history | UNIQUE | ?Gene | XREF | Corresponding_CDS_history | ||||
Corresponding_transcript | ?Transcript | XREF | Corresponding_CDS | #Evidence | ||||
Corresponding_protein | UNIQUE | ?Protein | XREF | Corresponding_CDS | #Evidence | |||
Corresponding_PCR_product | ?PCR_product | XREF | Overlaps_CDS | |||||
Corresponding_oligo_set | ?Oligo_set | XREF | Overlaps_CDS | |||||
Corresponding_transposon | UNIQUE | ?Transposon | XREF | Corresponding_CDS | ||||
Matching_cDNA | ?Sequence | XREF | Matching_CDS | #Evidence | ||||
Interaction | ?Interaction | |||||||
Expr_pattern | ?Expr_pattern | XREF | CDS | |||||
RNAi_result | ?RNAi | XREF | Predicted_gene | |||||
GO_term | ?GO_term | XREF | CDS | ?GO_code | #Evidence | |||
Variation | ?Variation | XREF | Predicted_CDS | |||||
Microarray_results | ?Microarray_results | XREF | CDS | |||||
Reference | ?Paper | XREF | CDS | |||||
Provisional_description | ?Text | #Evidence | ||||||
Detailed_description | ?Text | #Evidence | ||||||
Concise_description | ?Text | #Evidence | ||||||
Brief_identification | UNIQUE | ?Text | #Evidence | |||||
Confidential_remark | ?Text | |||||||
SAGE_tag | ?SAGE_tag | XREF | Predicted_CDS | #SAGE_mapping_info | ||||
3d_data | ?3d_data | XREF | CDS | |||||
RNASeq_FPKM | ?Life_stage | Float | #Evidence | |||||
Last_reviewed | UNIQUE | DateType | UNIQUE | ?Person | ||||
Remark | ?Text | #Evidence | ||||||
Associated_feature | ?Feature | XREF | Associated_with_CDS | #Evidence | ||||
Method | UNIQUE | ?Method |