WormBase Schema for Model: Variation
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?Variation | Evidence | #Evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Name | Public_name | UNIQUE | ?Variation_name | XREF | Public_name_for | |||||||
Other_name | ?Variation_name | XREF | Other_name_for | #Evidence | ||||||||
Rearrangement | ?Rearrangement | XREF | Variation | |||||||||
HGVSg | UNIQUE | Text | #Evidence | |||||||||
Sequence_details | SMap | S_parent | UNIQUE | Sequence | UNIQUE | ?Sequence | XREF | Allele | ||||
Flanking_sequences | UNIQUE | Text | UNIQUE | Text | ||||||||
Mapping_target | UNIQUE | ?Sequence | ||||||||||
Source_location | UNIQUE | Int | UNIQUE | ?Sequence | UNIQUE | Int | UNIQUE | Int | UNIQUE | #Evidence | ||
CGH_deleted_probes | UNIQUE | Text | UNIQUE | Text | ||||||||
CGH_flanking_probes | UNIQUE | Text | UNIQUE | Text | ||||||||
Type_of_mutation | Substitution | UNIQUE | Text | UNIQUE | Text | #Evidence | ||||||
Insertion | UNIQUE | Text | #Evidence | |||||||||
Deletion | UNIQUE | Text | #Evidence | |||||||||
Tandem_duplication | #Evidence | |||||||||||
PCR_product | ?PCR_product | XREF | Variation | |||||||||
SeqStatus | UNIQUE | Not_sequenced | ||||||||||
Sequenced | ||||||||||||
Pending_curation | ||||||||||||
Deletion_verification | Text | #Evidence | ||||||||||
Variation_type | Engineered_allele | |||||||||||
Allele | ||||||||||||
SNP | ||||||||||||
Confirmed_SNP | ||||||||||||
Predicted_SNP | ||||||||||||
RFLP | Reference_strain_digest | Text | Text | Text | ||||||||
Polymorphic_strain_digest | Text | Text | Text | |||||||||
Transposon_insertion | ?Transposon_family | XREF | In_variation | |||||||||
Natural_variant | ||||||||||||
Origin | Species | UNIQUE | ?Species | |||||||||
Strain | ?Strain | XREF | Variation | #Evidence | ||||||||
Component_of_genotype | ?Genotype | XREF | Variation | |||||||||
Laboratory | ?Laboratory | |||||||||||
Author | ?Author | |||||||||||
Person | ?Person | |||||||||||
Analysis | ?Analysis | |||||||||||
Corresponding_transgene | UNIQUE | ?Transgene | XREF | Corresponding_variation | ||||||||
Production_method | CRISPR_Cas9 | |||||||||||
Homologous_recombination | ||||||||||||
MosSci | ||||||||||||
MosDEL | ||||||||||||
NHEJ | ||||||||||||
TALENs | ||||||||||||
ZFNNHEJ_repair | ||||||||||||
ZFNHR_repair | ||||||||||||
Expr_pattern | ?Expr_pattern | XREF | Variation | #Evidence | ||||||||
DB_info | Database | ?Database | ?Database_field | UNIQUE | ?Text | |||||||
KO_consortium_allele | ||||||||||||
NBP_allele | ||||||||||||
NemaGENETAG_consortium_allele | ||||||||||||
Detection_method | Text | |||||||||||
Positive_clone | ?Clone | XREF | Positive_variation | #Evidence | ||||||||
Nature_of_variation | UNIQUE | Polymorphic | ||||||||||
Synthetic | ||||||||||||
History | Merged_into | UNIQUE | ?Variation | XREF | Acquires_merge | |||||||
Acquires_merge | ?Variation | XREF | Merged_into | |||||||||
Split_from | UNIQUE | ?Variation | XREF | Split_into | ||||||||
Split_into | ?Variation | XREF | Split_from | |||||||||
Status | UNIQUE | Live | #Evidence | |||||||||
Suppressed | #Evidence | |||||||||||
Dead | #Evidence | |||||||||||
Linked_to | ?Variation | XREF | Linked_to | |||||||||
Affects | Gene | ?Gene | XREF | Allele | #Molecular_change | |||||||
Predicted_CDS | ?CDS | XREF | Variation | #Molecular_change | ||||||||
Transcript | ?Transcript | XREF | Variation | #Molecular_change | ||||||||
Pseudogene | ?Pseudogene | XREF | Variation | #Molecular_change | ||||||||
Feature | ?Feature | XREF | Associated_with_variation | |||||||||
Interactor | ?Interaction | XREF | Variation_interactor | |||||||||
Possibly_affects | ?Gene | XREF | Possibly_affected_by | #Evidence | ||||||||
Isolation | Date | DateType | ||||||||||
Mutagen | UNIQUE | Text | #Evidence | |||||||||
Forward_genetics | Text | #Evidence | ||||||||||
Reverse_genetics | Text | #Evidence | ||||||||||
Transposon_excision | ?Transposon_family | |||||||||||
Derived_from_variation | ?Variation | XREF | Derivative | |||||||||
Derivative | ?Variation | XREF | Derived_from_variation | |||||||||
Derived_from_construct | ?Construct | XREF | Engineered_variation | |||||||||
Genetics | Gene_class | ?Gene_class | XREF | Variation | ||||||||
Mating_efficiency | male | UNIQUE | ME0_Mating_not_successful | #Evidence | ||||||||
ME1_Mating_rarely_successful | #Evidence | |||||||||||
ME2_Mating_usually_successful | #Evidence | |||||||||||
ME3_Mating_always_successful | #Evidence | |||||||||||
hermaphrodite | UNIQUE | HME0_Mating_not_successful | #Evidence | |||||||||
HME1_Mating_rarely_successful | #Evidence | |||||||||||
HME2_Mating_usually_successful | #Evidence | |||||||||||
HME3_Mating_always_successful | #Evidence | |||||||||||
Map | ?Map | XREF | Variation | #Map_position | ||||||||
Interpolated_map_position | UNIQUE | ?Map | UNIQUE | Float | ||||||||
Mapping_data | 2_point | ?2_point_data | ||||||||||
Multi_point | ?Multi_pt_data | |||||||||||
Pos_neg_data | ?Pos_neg_data | |||||||||||
In_2_point | ?2_point_data | |||||||||||
In_multi_point | ?Multi_pt_data | |||||||||||
In_pos_neg_data | ?Pos_neg_data | |||||||||||
Marked_rearrangement | ?Rearrangement | XREF | By_variation | |||||||||
Description | Phenotype | ?Phenotype | XREF | Variation | #Phenotype_info | |||||||
Phenotype_remark | ?Text | #Evidence | ||||||||||
Phenotype_not_observed | ?Phenotype | XREF | Not_in_Variation | #Phenotype_info | ||||||||
Disease_info | Models_disease | ?DO_term | XREF | Disease_model_variation | ||||||||
Modifies_disease | ?DO_term | XREF | Disease_modifier_variation | |||||||||
Models_disease_in_annotation | ?Disease_model_annotation | XREF | Variation | |||||||||
Modifies_disease_in_annotation | ?Disease_model_annotation | XREF | Modifier_variation | |||||||||
Modifies_disease_asserted_variation | ?Disease_model_annotation | XREF | Asserted_variation | |||||||||
Reference | ?Paper | XREF | Allele | |||||||||
Remark | ?Text | #Evidence | ||||||||||
Method | UNIQUE | ?Method | ||||||||||
Supporting_data | Movie | ?Movie | XREF | Variation | #Evidence |